Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,602,061 – 2,602,181 |
Length | 120 |
Max. P | 0.950173 |
Location | 2,602,061 – 2,602,181 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.10 |
Mean single sequence MFE | -40.76 |
Consensus MFE | -33.69 |
Energy contribution | -33.84 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.19 |
Mean z-score | -3.03 |
Structure conservation index | 0.83 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950173 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2602061 120 + 27905053 CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAAAUGGCGUUCGGCACAUUGUCGGACUGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACCU ..((((..((((.(((((...((((((((((......(((((((((((.....))))))).))))..........))))))))))...)))))))))..)))).((((........)))) ( -44.19) >DroPse_CAF1 75970 120 + 1 CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGCCCGAUGUAUUUUCGAGUGUUUGUGUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA ((((((..((((.(((((...((((((((((.((((((.((((.(((.......))).))))..)))).))....))))))))))...)))))))))..)))).)).............. ( -38.70) >DroEre_CAF1 70249 119 + 1 CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAAAUGGCGUUCGACGC-UUGUCGGAUUGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAUAAACCU ..((((..((((.(((((...((((((((((......(((((((((((..-..)))))).)))))..........))))))))))...)))))))))..)))).((((........)))) ( -42.29) >DroMoj_CAF1 79851 109 + 1 CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAGUGCAUACGA-----------AUGCCAUUGUCAAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA ((((((..((((.(((((...((((((((((.(((((((((((....-----------))).)))))).))....))))))))))...)))))))))..)))).)).............. ( -35.60) >DroAna_CAF1 60231 120 + 1 CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGUUCGAUGCAUUGUCGGACUGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA ((((((..((((.(((((...((((((((((...((...(((((((((.....))))))).)).......))...))))))))))...)))))))))..)))).)).............. ( -40.30) >DroPer_CAF1 76373 120 + 1 CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGCUCGAUGUAUUUUCGAGUGUUUGUGUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA ((((((..((((.(((((...((((((((((.((((((.((((((((.......))))))))..)))).))....))))))))))...)))))))))..)))).)).............. ( -43.50) >consensus CCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAUUGCGUUCGAUGCAUUGUCGGAUGGCUGGCUCGAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAA ((((((..((((.(((((...((((((((((..........(((((((.....)))))))...............))))))))))...)))))))))..)))).)).............. (-33.69 = -33.84 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:22 2006