Locus 7287

Sequence ID 3R_DroMel_CAF1
Location 19,233,241 – 19,233,343
Length 102
Max. P 0.758639
window11786

overview

Window 6

Location 19,233,241 – 19,233,343
Length 102
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 82.08
Mean single sequence MFE -29.15
Consensus MFE -18.14
Energy contribution -18.46
Covariance contribution 0.32
Combinations/Pair 1.14
Mean z-score -2.40
Structure conservation index 0.62
SVM decision value 0.50
SVM RNA-class probability 0.758639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19233241 102 + 27905053
ACAAAGGGAGCU-AGUAGUUGUAACGACUACA----------GCUCGUGUAGUUUCACAGCUCCAGCUGCUUUAUGGUUAUUUGUCUAGCCAUCAAAUAUGACUUUCCUUUCG
..((((((((((-.(((((((...))))))))----------))((((((.......((((....))))....(((((((......)))))))...))))))..))))))).. ( -29.60)
>DroSec_CAF1 29029 102 + 1
ACGAAGGGAGCU-CGUAGUUGUAACGACUACG----------GCUCGUGUAGUUUCACAGCUCCAGCUGGUUUAUGGUUAUUUGUCUAGCCAUCAAAUAUGACUUUCCUUUCG
.((((((((((.-((((((((...))))))))----------))((((((.......((((....))))....(((((((......)))))))...))))))...)))))))) ( -36.70)
>DroSim_CAF1 29296 102 + 1
ACGAAGGGAGCU-CGUAGUUGUAACGACUACG----------GCUCGUGUAGUUUCACAGCUCCAGCUGCUUUAUGGUUAUUUGUCUAGCCAUCAAAUAUGACUUUCCUUUCG
.((((((((((.-((((((((...))))))))----------))((((((.......((((....))))....(((((((......)))))))...))))))...)))))))) ( -35.80)
>DroEre_CAF1 29952 103 + 1
ACAAAGGGAUCUUUGCAGUUGUAAUGACUACA----------GCCAGUGUAGUUUCACAGCUCCAGCUGCUUUAUGGUUAUUUGUCUAGCCAUCAAAUAUGACUUUCCUUUCG
..(((((((.....(((((((....(((((((----------.....))))))).........)))))))...(((((((......)))))))...........))))))).. ( -25.72)
>DroYak_CAF1 30497 112 + 1
ACAAAGGGAUCU-UGCUGUUGUAAUGACUACAUAGCAUAGUGGUGUGUGUAGUUUCGCAGCUCCAGCUGCUUUAUGGUUAUUUGUCUAGCCAUCAAAUAUGACUUUCCUUUCG
..(((((((...-((((((.(((.....))))))))).(((.((((.((.......(((((....)))))...(((((((......))))))))).)))).)))))))))).. ( -31.60)
>DroAna_CAF1 30029 85 + 1
ACGAAGGCAACU-CUUAUUU--------UACG----------ACUCUUGUU---------AUCCAGCUGGCUUAUGGUUAUUUGUCUAGCCAUCCAAGAUGACUUUCCUUUCG
.(((((....).-.......--------....----------......(((---------(((....(((...(((((((......)))))))))).))))))......)))) ( -15.50)
>consensus
ACAAAGGGAGCU_CGUAGUUGUAACGACUACA__________GCUCGUGUAGUUUCACAGCUCCAGCUGCUUUAUGGUUAUUUGUCUAGCCAUCAAAUAUGACUUUCCUUUCG
..(((((((.....(.((((((...(((((((...............)))))))..)))))).).........(((((((......)))))))...........))))))).. (-18.14 = -18.46 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:07 2006