Locus 7286

Sequence ID 3R_DroMel_CAF1
Location 19,232,179 – 19,232,299
Length 120
Max. P 0.684898
window11785

overview

Window 5

Location 19,232,179 – 19,232,299
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.00
Mean single sequence MFE -41.79
Consensus MFE -34.02
Energy contribution -33.28
Covariance contribution -0.74
Combinations/Pair 1.39
Mean z-score -1.97
Structure conservation index 0.81
SVM decision value 0.31
SVM RNA-class probability 0.684898
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19232179 120 + 27905053
AUGCUGCCGGUGGAGGCCGAUGUGCCACCAUUUGAGUAUUACACUAGGGUCUUUGAGCUGGCUGCUUUCCUGCUAACUCUGGGUACCCUGGUACUGAUAUCCUGUCUCCUGGCCAGCGCU
..((((((((..(((((......))).......(..(((((.((((((((((..(((.((((.........)))).)))..)).))))))))..)))))..)..))..)))).))))... ( -44.60)
>DroSec_CAF1 27966 120 + 1
AUGCUGCCGGUGGAGGCGGAUGUGCCACCAUUUGAGUAUUAUACAAGGGUCUUUGAGCUGGCUGCUUUCCUGCUAACCCUGGGUACCCUGGUAAUGAUAUCCUGUCUCCUGGCCAGCGCU
..(((((((..((((((((((((...((((...(.(((((.....(((((.....(((.((.......)).))).))))).)))))).))))....)))))).))))))))).))))... ( -41.30)
>DroSim_CAF1 28233 120 + 1
AUGCUGCCGGUGGAGGCCGAUGUGCCACCAUUUGAGUACUACACUAGGGUCUUUGAGCUAGCUGCUUUUCUGCUAACUCUGGGUACCCUGGUAAUGAUAUCCUGUCUCCUGGCCAGCACA
.((((((((..((((((.(((((((((.....)).))))...((((((((((..(((.((((.........)))).)))..)).))))))))......)))..))))))))).))))).. ( -46.00)
>DroEre_CAF1 28939 120 + 1
AUGCUGCCGGUGGAGGCCGAUGUGCCACCAUUUGAGUAUUACACCAGGGUCUUUGAGCUGGCUGCUUUUCUGCUAACUCUGGGAACCCUAGUGAUAAUAUCCUGUCUCCUGGCCAGCGCC
..((((((((..(((((......))).......(..((((((((.(((((((..(((.((((.........)))).)))..)).))))).))).)))))..)..))..)))).))))... ( -44.50)
>DroYak_CAF1 29455 120 + 1
AUGCUGCCAGUGGAGGCGGAUGUGCCACCAUUUGAGUAUUACACCAGGGUCUUUGAGCUGACUGCCUUCCUGCUAACUCUGGGUAUCCUGGUGAUAAUAUCCUGUCUCCUGGCCAGCGCU
..(((((((..((((((((((((..(((((...((....(((.(((((((.....(((.((......))..))).)))))))))))).)))))...)))))).))))))))).))))... ( -46.20)
>DroAna_CAF1 28927 120 + 1
AUGAUGCCUCUAGAAGCGGAUGUUCCACCUUUGGAGUAUUACACCAGGGUCUUUGAGUUAGCCGCCUUUUUGUUGACUUUGGUAAUUUUGGUUAUAAUUUCCUGUCUUUUAACCAUUACU
.((((((.((((((.(.((.....)).).)))))))))))).(((((((((..((((...........))))..))))))))).....((((((...............))))))..... ( -28.16)
>consensus
AUGCUGCCGGUGGAGGCCGAUGUGCCACCAUUUGAGUAUUACACCAGGGUCUUUGAGCUGGCUGCUUUCCUGCUAACUCUGGGUACCCUGGUAAUAAUAUCCUGUCUCCUGGCCAGCGCU
.(((((((...((((((....((((((.....)).))))...((((((((((..(((.((((.........)))).)))..)).))))))))...........)))))).)).))))).. (-34.02 = -33.28 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:06 2006