| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,229,782 – 19,229,887 |
| Length | 105 |
| Max. P | 0.699991 |
| Location | 19,229,782 – 19,229,887 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 79.43 |
| Mean single sequence MFE | -31.38 |
| Consensus MFE | -17.72 |
| Energy contribution | -18.20 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19229782 105 + 27905053 CCAUUUCUCCGGCUCGUGAUUUAAUUGCUUCCGUGCAAAAUGGUAGUGUCCAAAUUGCUCUGGGUGCGAUUUAUCCCCAAGUUCCAUAUACAGGAUAUUCGUAUC ........((((...(..((((...((((.((((.....)))).))))...))))..).))))((((((..(((((................))))).)))))). ( -23.79) >DroSec_CAF1 25569 105 + 1 CCAUUUCUCCGGCCCGUGAUUUAAUUGCUGCCGUGCGAAAUGGUAGUGUCCAAAUAGCUCUGGGUGCUAUUUAUCCCCAACAUCCAUAUACUGGAUUUUCUUAUC (((((((.(((((..(..((...))..).)))).).)))))))(((..((((........))))..)))............(((((.....)))))......... ( -29.00) >DroSim_CAF1 25844 105 + 1 CCAUUUCUCCGGCUCGUGAUUUAAUUGCUGCCGUGCGAAAUGGUAGUGUCCAAAUUGCUUUGGGCGCUAUUUAUCCCCAGCACCCAUAUACUGGAUUUUCUUAUC (((((((.(((((..(..((...))..).)))).).)))))))(((((((((((....))))))))))).......((((..........))))........... ( -34.00) >DroEre_CAF1 26539 105 + 1 CCAUUCCUCCGGCUCGUGAUUUAAUUGCUGCCGUGCGAAAUGGUAGUGUGCAAAUUGCUUUGGGGGCUAUUCAUCCCCAACUUCCUUAUACUGGGUUUUCUUAUC .......(((((...(..((((...(((((((((.....)))))))))...))))..).(((((((.......)))))))..........))))).......... ( -28.90) >DroYak_CAF1 27027 105 + 1 CCAUUUCACCGGCUCGUGAUUUACUUGCUGCCGUGCGAAAUGGUAGUGUUCAAGUGGCUUUAGGGGCUAUUUAUCCCCUACGUCCAUAUACUGGGUAUUCAUAUC (((((((.(((((..(..(.....)..).)))).).)))))))((((((....((((...((((((........))))))...))))))))))............ ( -33.10) >DroPer_CAF1 38992 105 + 1 CCAUUCCGCCGGCUCUGCAACUGAUUGGGGCAGUGCGUAACGGAAGCGCAGAGUUCGCUCUGGCGGCCGUCUAUCCCCAGGGGCCCUUCGUCGGCUUAACGUAUC .......((((((.((((..(.....)..)))).))...(((((.((.(((((....)))))))((((.(((......))))))).))))))))).......... ( -39.50) >consensus CCAUUUCUCCGGCUCGUGAUUUAAUUGCUGCCGUGCGAAAUGGUAGUGUCCAAAUUGCUCUGGGGGCUAUUUAUCCCCAACAUCCAUAUACUGGAUUUUCUUAUC .......(((((...(..((((...(((((((((.....)))))))))...))))..).(((((...........)))))..........))))).......... (-17.72 = -18.20 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:03 2006