| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,226,196 – 19,226,292 |
| Length | 96 |
| Max. P | 0.739415 |
| Location | 19,226,196 – 19,226,292 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.00 |
| Mean single sequence MFE | -24.62 |
| Consensus MFE | -13.61 |
| Energy contribution | -13.50 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19226196 96 - 27905053 GACCAGGCCUGC---GAU--GGUCUGGUCUGGUCUGGGACUCAUUGAAAAGCGAAAGAUGGCCAAAUGGA-AAUGGUGAAAAUGGCAA---------AAGGCCAAAAGCGG (((((((((...---...--)))))))))((((((..(.(.((((......(....).(.((((......-..)))).).))))))..---------.))))))....... ( -31.90) >DroPse_CAF1 35045 83 - 1 GGCCGGACCUGG--------GGCCU-----------GGUCUCAUUGAAAAGCGAAAGAUGACCAAAUAGAAAAUGGUGAAAAUGGCAA---------AAGGCCAAAAGCGG (((((((((.(.--------...).-----------)))))((((......(....).(.((((.........)))).).))))....---------..))))........ ( -20.60) >DroSec_CAF1 22087 87 - 1 GACCAGGUCUGC---GCUCAGGUCU-----------GGACUCAUUGAAAAGCGAAAGAUGGCCAAAUGGA-AAUGGUGAAAAUGGCAA---------AAGGCCAAAAGCGG ..((((..(((.---...)))..))-----------))............((......(.((((......-..)))).)...((((..---------...))))...)).. ( -23.70) >DroEre_CAF1 23122 83 - 1 GACCAGGCCUG---------GGUCU-----G----GGGACUCAUUGAAAAGCGAAAGAUGGCCAAAUGGA-AAUGGUGAAAAUGGCAA---------AAGGCCAAAAGCGG .(((.((((((---------((((.-----.----..))))))........(....)..))))..((...-.))))).....((((..---------...))))....... ( -23.40) >DroAna_CAF1 22407 99 - 1 CAACAGGCCUGGCCCGAUCCGGCCU-----------GGUCGCAUUGAAAAGCGAAAGAUGGCCAAAUGGA-AAUGGUGAAAAUGGCAAAAUGGUAAAAAGGCCAAAAGCGG .....(((((.(((...(((((((.-----------..((((........)))).....))))....)))-..(.((....)).)......)))....)))))........ ( -27.50) >DroPer_CAF1 35030 83 - 1 GGCCGGACCUGG--------GACCU-----------GGUCUCAUUGAAAAGCGAAAGAUGACCAAAUAGAAAAUGGUGAAAAUGGCAA---------AAGGCCAAAAGCGG (((((((((.(.--------...).-----------)))))((((......(....).(.((((.........)))).).))))....---------..))))........ ( -20.60) >consensus GACCAGGCCUGG________GGCCU___________GGACUCAUUGAAAAGCGAAAGAUGGCCAAAUGGA_AAUGGUGAAAAUGGCAA_________AAGGCCAAAAGCGG .....(((((...........(((...........................(....).(.((((.........)))).)....)))............)))))........ (-13.61 = -13.50 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:02 2006