Locus 7282

Sequence ID	3R_DroMel_CAF1
Location	19,225,650 – 19,225,743
Length	93
Max. P	0.752763

overview

Window 1

Location	19,225,650 – 19,225,743
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	85.38
Mean single sequence MFE	-28.18
Consensus MFE	-21.38
Energy contribution	-21.66
Covariance contribution	0.28
Combinations/Pair	1.05
Mean z-score	-1.82
Structure conservation index	0.76
SVM decision value	0.48
SVM RNA-class probability	0.752763
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19225650 93 + 27905053
AUUAGUUGUUAUAAUAUUUUCCAGUGCAUCCCGACUUGGUCUGUUCCUGGCCAGUUAGGAGUGACACGUUCACUGCUGAUUGCUAGGAAACGA
.....(((((...............(((..((.....))..)))(((((((.((((((.(((((.....))))).)))))))))))))))))) ( -27.90)
>DroSim_CAF1 21791 93 + 1
AUUAGUUGCUAUAAUUGUUUCCAGUGCAUCCCGACUUGGCCUGUUCCUGACCAGUUAGGAGUGACACGUUCACUGCUGAUUGCUAGGAAACGA
..............((((((((((.(((..((.....))..)))..))...(((((((.(((((.....))))).)))))))...)))))))) ( -25.00)
>DroEre_CAF1 22569 93 + 1
AUUAGAGGUUAUAACUUUUGCCAGUGCAGCUCGACUUGGUCGGUUCCCGGCCAGUUAGUAGUGACACGUUCACUGCUGAUUGCUAGGAAACGA
..(((((((....)))))))(((((........)).)))(((.((((..((.((((((((((((.....))))))))))))))..)))).))) ( -31.00)
>DroYak_CAF1 22795 93 + 1
AUUAGUUGUUAUAAUUUGUUGCAGUGCACCCCGACUUGGUCUGUUCCUGGCCAGUUAGGAGUGACACGUUCACUGCUGAUUGCUAGGAAACGA
...............(((((((((...(((.......)))))))(((((((.((((((.(((((.....))))).)))))))))))))))))) ( -28.50)
>DroAna_CAF1 21855 90 + 1
ACUGGCUGCUU--A-UUUUUUCAGUGCAUUCCCGUUUAGGCAGUUCCUGGCCUGUUAGGAAUGACACGUUCAUUGCUGAUUGCUAGGAAACGA
....(((((((--(-.....................))))))))(((((((..(((((.(((((.....))))).))))).)))))))..... ( -28.50)
>consensus
AUUAGUUGUUAUAAUUUUUUCCAGUGCAUCCCGACUUGGUCUGUUCCUGGCCAGUUAGGAGUGACACGUUCACUGCUGAUUGCUAGGAAACGA
...........................................((((((((.((((((.(((((.....))))).)))))))))))))).... (-21.38 = -21.66 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:01 2006