| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,224,516 – 19,224,615 |
| Length | 99 |
| Max. P | 0.580664 |
| Location | 19,224,516 – 19,224,615 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.49 |
| Mean single sequence MFE | -27.05 |
| Consensus MFE | -8.89 |
| Energy contribution | -9.25 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580664 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19224516 99 - 27905053 GCGGC-GGGUUAACAAAUCGCCAGCGAUGCCUGGCGAGGAUAAGAAGGAAGCUUUUUGGGGGAAACCCAAUGCACGAGUAAUAACCGAAACGAUCCGAUA ....(-(((((......(((((((......)))))))((.(((((((....)))))))(((....)))................)).....))))))... ( -33.70) >DroPse_CAF1 33539 77 - 1 CCGGC-UUCCAAACAAAUCGCCUGCGAUGCCA------GAUAAG-----AGCU------GCGAAACUUAAUACACCAAAUAUAA-----UGAAUCCUACA .((((-((........((((....))))....------.....)-----))))------)........................-----........... ( -9.83) >DroSec_CAF1 20491 99 - 1 GCGGC-GGGUUAACAAAUCGCCAGCGAUGCCUGGCGAGGAUAAGAAGGAAGCUUUUUGGGGGAAACCCAAUACACGAGUAAUAACCGAAACGAUCCGAUA ....(-(((((......(((((((......)))))))((.(((((((....)))))))(((....)))................)).....))))))... ( -33.70) >DroSim_CAF1 20675 99 - 1 GCGGC-GGGUUAACAAAUCGCCAGCGAUGCCUGCCGAGGAUAAGAAGGAAGCUUUUUGGGGGAAACCCAAUACACGAGUAAUAACCGAAACGAUCCGAAA .((((-((((......((((....)))))))))))).((((((((((....)))))).(((....)))......((.((....)))).....)))).... ( -33.50) >DroEre_CAF1 21468 87 - 1 GCA-CAGGGUUAACAAAUCGCCGGCGAUGCUUGGUGAGGAUAAGUCGAAAGCUU-UUGGGGGAAACCCAAUAACCGA-----------AUGGAUUCGAUA ...-...(((((.(((.((((((((...)).))))))....(((.(....))))-)))(((....)))..)))))..-----------............ ( -23.80) >DroYak_CAF1 21667 94 - 1 GCGGCGGGUUUAACAAAUCGCCAGCGAUGCCUGCCGCGGAUAAGAAGAAAGCUU-UCGGGCGAAACUCAAUACACGACUAAUA-----ACCGAUCCAAAA (((((((((.......((((....)))))))))))))((((..((((....)))-)(((.......((.......))......-----.))))))).... ( -27.75) >consensus GCGGC_GGGUUAACAAAUCGCCAGCGAUGCCUGGCGAGGAUAAGAAGGAAGCUU_UUGGGGGAAACCCAAUACACGAGUAAUAA____AACGAUCCGAUA ..(((...........((((....)))))))......(((((((.......)))....(((....)))........................)))).... ( -8.89 = -9.25 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:00 2006