Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,601,542 – 2,601,638 |
Length | 96 |
Max. P | 0.845945 |
Location | 2,601,542 – 2,601,638 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 67.70 |
Mean single sequence MFE | -29.44 |
Consensus MFE | -9.06 |
Energy contribution | -10.82 |
Covariance contribution | 1.76 |
Combinations/Pair | 1.22 |
Mean z-score | -2.07 |
Structure conservation index | 0.31 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2601542 96 + 27905053 AGUUUGUGCA------AACCUUUCCU--CCUUCCAGGACGCACGGCCGUAAGGA--------CGCCAGUGAAGCCCCACAAUAUCCUGGA-ACGGGUUAAGAAUGCAAACAAA .((((((...------...(((..((--(.((((((((....((.((....)).--------))...(((......)))....)))))))-).)))..)))...))))))... ( -30.70) >DroSim_CAF1 66159 104 + 1 AGUUUGUGCA------AGCCUUUCCU--CCUUCCAGGACGCAAGGACGCAAGGACGCCAGGACGCCAGUGAAGCCCCACAAUUUCCUGGA-AAGGGUUAAGAAUGCAAACAAA .((((((...------(((((((..(--((((...(..(....)..)..)))))..((((((.....(((......)))....)))))).-)))))))......))))))... ( -30.90) >DroEre_CAF1 69711 88 + 1 AGUUUGUGUA------AACCCUUCCU--CGUUCCA----------------GGACGCUAGGAAGCCAGUGAAGCCCCACAAUUUCCUGAA-ACGGGUUAAGAAUGCAAACAAA .((((((((.------((((((((((--((((...----------------.))))..)))))..(((.((((........)))))))..-..)))))....))))))))... ( -24.80) >DroYak_CAF1 68776 104 + 1 AGUUUGUGUA------AACCUUUUCU--CGUUCCACGACGUAAGUACGCAAGGACGCAAGGACUCCAGUGAAGCCCCACAAUUUCCUGGA-ACGAGUUAAGAAUGCAAACAAA .((((((((.------...(((..((--((((((.((((....)).))..(((((....).......(((......)))....)))))))-)))))..))).))))))))... ( -33.40) >DroMoj_CAF1 79153 97 + 1 CGUAUUUGCAGCUUAGAAGCAUUACGGGUAUUCCAGGAGCAGA-ACC-----------AG--CAGCAGUCGAGC--AGCCAUUUCCUGUGGCUGCGUUAAGGAUGCACACAAU .((.(((((.(((....)))......((....))....)))))-...-----------..--..(((..(..((--((((((.....)))))))).....)..)))))..... ( -27.40) >consensus AGUUUGUGCA______AACCUUUCCU__CCUUCCAGGACGCAAGGACG_AAGGACGC_AGGACGCCAGUGAAGCCCCACAAUUUCCUGGA_ACGGGUUAAGAAUGCAAACAAA .((...((((......(((((..........(((((((.............((...........)).(((......)))....)))))))...))))).....)))).))... ( -9.06 = -10.82 + 1.76)
Location | 2,601,542 – 2,601,638 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 67.70 |
Mean single sequence MFE | -32.92 |
Consensus MFE | -6.42 |
Energy contribution | -6.90 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.33 |
Mean z-score | -2.19 |
Structure conservation index | 0.20 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2601542 96 - 27905053 UUUGUUUGCAUUCUUAACCCGU-UCCAGGAUAUUGUGGGGCUUCACUGGCG--------UCCUUACGGCCGUGCGUCCUGGAAGG--AGGAAAGGUU------UGCACAAACU (((((..(((..(((..(((.(-((((((((...(((.((((.....((..--------.))....)))).)))))))))))).)--.))..)))..------)))))))).. ( -33.60) >DroSim_CAF1 66159 104 - 1 UUUGUUUGCAUUCUUAACCCUU-UCCAGGAAAUUGUGGGGCUUCACUGGCGUCCUGGCGUCCUUGCGUCCUUGCGUCCUGGAAGG--AGGAAAGGCU------UGCACAAACU (((((..(((..(((..(((((-(((((((...((..(((...((..(((((....)))))..))...)))..))))))))))))--.))..)))..------)))))))).. ( -39.90) >DroEre_CAF1 69711 88 - 1 UUUGUUUGCAUUCUUAACCCGU-UUCAGGAAAUUGUGGGGCUUCACUGGCUUCCUAGCGUCC----------------UGGAACG--AGGAAGGGUU------UACACAAACU (((((.((.((((((..(((((-(((((((..(((.((((((.....)))))).)))..)))----------------)))))))--.)))))))).------)).))))).. ( -31.80) >DroYak_CAF1 68776 104 - 1 UUUGUUUGCAUUCUUAACUCGU-UCCAGGAAAUUGUGGGGCUUCACUGGAGUCCUUGCGUCCUUGCGUACUUACGUCGUGGAACG--AGAAAAGGUU------UACACAAACU ...(((((...((((..(((((-((((.((......(((((((.....)))))))(((((....)))))......)).)))))))--))..))))..------....))))). ( -34.60) >DroMoj_CAF1 79153 97 - 1 AUUGUGUGCAUCCUUAACGCAGCCACAGGAAAUGGCU--GCUCGACUGCUG--CU-----------GGU-UCUGCUCCUGGAAUACCCGUAAUGCUUCUAAGCUGCAAAUACG ...(((((((..((((..(((((((.......)))))--))..((..((((--(.-----------(((-(((......)))..))).)))..)).)))))).))))..))). ( -24.70) >consensus UUUGUUUGCAUUCUUAACCCGU_UCCAGGAAAUUGUGGGGCUUCACUGGCGUCCU_GCGUCCUU_CGGCCUUGCGUCCUGGAACG__AGGAAAGGUU______UGCACAAACU ...(((((..........((...(((((((....(((......))).((...........)).............)))))))......))....((........)).))))). ( -6.42 = -6.90 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:19 2006