Locus 7279

Sequence ID 3R_DroMel_CAF1
Location 19,221,950 – 19,222,053
Length 103
Max. P 0.751955
window11777

overview

Window 7

Location 19,221,950 – 19,222,053
Length 103
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 76.71
Mean single sequence MFE -24.34
Consensus MFE -13.68
Energy contribution -13.64
Covariance contribution -0.04
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.56
SVM decision value 0.48
SVM RNA-class probability 0.751955
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19221950 103 - 27905053
ACACCGAUAGCCAGAUACCCAGAUACCUAGGUACCCAAAACC-----CCAUCC----CCCAUCCGCAUUCAUGCAUACCGCUAACGAGCGGCGCGUGGUCU--GGCCCAAAAGA
.........((((((((((.((....)).)))..........-----......----............(((((...(((((....))))).)))))))))--)))........ ( -27.70)
>DroSec_CAF1 18013 97 - 1
ACACCGAUAGCCAGAUACCCAGGUAUCCA------CAACCCC-----CCAUUC----CCCAUCCGCAUUCAUGCAUACCGCUAACGAGCGGCGCGUGGUCU--GGCCCAAAAGA
.........(((((((((....))).(((------(......-----......----.......(((....)))...(((((....)))))...)))))))--)))........ ( -26.20)
>DroSim_CAF1 18169 97 - 1
ACCCCGAUAGCCUGAUACCCAGGUAUCCA------CAACCCC-----CCAUCC----CCCAUCCGCAUUCAUGCAUACCGCUAACGAGCGGCGCGUGGUCU--GGCCCAAAAGA
.....((((.((((.....))))))))..------.......-----......----.......((..((((((...(((((....))))).))))))...--.))........ ( -23.60)
>DroEre_CAF1 18668 107 - 1
ACCCAGAUACACAGAUACCCAGGCCUCCA------GAACCCCAACCCCAACCCCAUCUCUAUCGGCAUCCAUGCAUACCGCUAACGAGCGACGCGUGGUCUUUGGGCCA-AACA
.....................(((((..(------((...............((.........))...((((((....((((....))))..)))))))))..))))).-.... ( -23.20)
>DroYak_CAF1 18966 91 - 1
ACUCAGAUAUCCAGAUACCCAGACCACCA------GAACCCCAUCCCCAAUCC----GCAAUCCGCAUCCAUGCAUACCGCUAACGAGCGGCGCGUGGUCU-------------
....................(((((((..------((......))........----((.....(((....)))...(((((....))))).)))))))))------------- ( -21.00)
>consensus
ACACCGAUAGCCAGAUACCCAGGUAUCCA______CAACCCC_____CCAUCC____CCCAUCCGCAUUCAUGCAUACCGCUAACGAGCGGCGCGUGGUCU__GGCCCAAAAGA
....................................................................((((((...(((((....))))).))))))................ (-13.68 = -13.64 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:57 2006