Locus 7275

Sequence ID 3R_DroMel_CAF1
Location 19,215,035 – 19,215,148
Length 113
Max. P 0.542409
window11771

overview

Window 1

Location 19,215,035 – 19,215,148
Length 113
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 70.00
Mean single sequence MFE -33.22
Consensus MFE -12.44
Energy contribution -13.48
Covariance contribution 1.04
Combinations/Pair 1.06
Mean z-score -1.71
Structure conservation index 0.37
SVM decision value 0.02
SVM RNA-class probability 0.542409
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19215035 113 + 27905053
UCGUCCAGUCUGUUU--GUCAGUCCGUCCACGUGUCCAGGUGUCCAUUGCUCCAUCUGUCCAACGGUCUAUCUAUAUAGCCGGUUGGAUUGCAA-AGGGGCAAAGGGGCAAAGGGG
..((((.((((.(((--(.(((((((.((...((..((((((..........))))))..))..((.((((....)))))))).))))))))))-).))))....))))....... ( -39.00)
>DroSec_CAF1 11344 88 + 1
CCGUCCAGUCUGUUU--GUCAGUCCGUCCACGUGUCCAGGUGUCCAUUGCUCCAUCUGUCCAU----------------UUGGUUGGAUGGCAA-AGGGGCAAAAG---------G
.......((((.(((--((((.((((.(((.(((..((((((..........))))))..)))----------------.))).))))))))))-).)))).....---------. ( -33.60)
>DroSim_CAF1 11471 88 + 1
CCGUCCAGUCUGUUU--GUCAGUCCGUCCUCGUGUCCAGGUGUCCAUUGCUCCAUCUGUCCAU----------------UUGGUUGGAUGGCAA-AGGGGCAAAAG---------G
.......((((.(((--((((.((((.((..(((..((((((..........))))))..)))----------------..)).))))))))))-).)))).....---------. ( -32.00)
>DroEre_CAF1 11791 91 + 1
CCGUCCAGCCUGUUU--GUCAGUCCGUCCCGUUGUCCAGUGGUCCAUUGCUCCAUCUGUCCAACGGUCCAUCUAUAUUGCUG----GAUGGCAA-AGG------------------
((((((((((((...--..)))...(..((((((..((((((.........))).)))..))))))..).........))))----)))))...-...------------------ ( -35.00)
>DroYak_CAF1 11826 90 + 1
CCGUCCAGUCUGUUUGUGUCAGUCCGUCCACGUGUCCAACUG-----GGCUCCAUGUGUCCAAUGGUCCAACUAUAGAGCUG---GGAUGGCAAAAGG------------------
((((((((((((((((..(((....(..(((((((((....)-----)))...)))))..)..)))..)))..))))).)).---)))))).......------------------ ( -26.50)
>consensus
CCGUCCAGUCUGUUU__GUCAGUCCGUCCACGUGUCCAGGUGUCCAUUGCUCCAUCUGUCCAA_GGUC_A_CUAUA__GCUGGUUGGAUGGCAA_AGGGGCAAA_G_________G
((((((.(.(((.......))).)........((..((((((..........))))))..)).......................))))))......................... (-12.44 = -13.48 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:52 2006