| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,212,533 – 19,212,639 |
| Length | 106 |
| Max. P | 0.780761 |
| Location | 19,212,533 – 19,212,639 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.62 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -20.49 |
| Energy contribution | -19.77 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780761 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19212533 106 - 27905053 ACUG----UGUGCGGAUUGAUUUGCU-UGGCGCAUUUUCAAGUCAAUUACACAUAUUUGUGGCAUUUGCGGCAAUUGAGUAUGAAAACUCAU---GCGGUGGGUCGUUGCAGCA ..((----((((..((((((((((..-...........)))))))))).)))))).(((..(((((..(.(((..(((((......))))))---)).)..))).))..))).. ( -33.52) >DroVir_CAF1 29493 104 - 1 AAAGUUUGGUCUUGGAUUGAUUUGCU-CGGCGCAUUUUCAAGUCAAUUACACAUAUUUGUGGCAUUUGUGGCACUCAAAUAUGAAUACCCAU---GCGGUGGGUCG------CA .....((((.((((((......(((.-....)))..)))))))))).....((((((((.(((.......)).).))))))))...((((((---...))))))..------.. ( -24.10) >DroGri_CAF1 25512 99 - 1 -----UGGGGCUUGGAUUGAUUUGCU-UGCCGCAUUUUCAAGUCAAUUACACAUAUUUGUGGCAUUUGUGGCACUCAAAUGUGAAUACCCAU---GCGGUGGGUCG------CA -----((((..(((..((((..(((.-....)))...))))..)))...(((((....(((.((....)).)))....)))))....))))(---((((....)))------)) ( -28.00) >DroWil_CAF1 38063 92 - 1 ---------AUUCAGAUUGAUUUGCUUUGGCGCAUUUUCAAGUCAAUUACACAUUUUUGUGGCAUUUGCGGCAAUUGAGUAUGAAAACUCAU---GUGGUGGGU---------- ---------(((((((((((((((...((...))....)))))))))).((((...((((.((....)).)))).(((((......))))))---))).)))))---------- ( -22.50) >DroMoj_CAF1 13554 98 - 1 ---------UGCGGGAUUGAUUUGCU-UGCCGCAUUUUCAAGUCAAUUACACAUAUUUGUGGCAUUUGUGGCACUCGUAUUUGGAUACCCACCGCAUGGUGGGUCG------CG ---------((((((.((((..(((.-....)))...))))((((....((((....)))).......)))).))))))....(..(((((((....)))))))..------). ( -31.10) >DroPer_CAF1 21966 95 - 1 -UUG----UGUGCGGAUUGAUUUGCU-UGCCGCAUUUUCAAGUCAAUUACACAUAUUUGUGGCAUUUGCGGCAAUUGAGUAUGAAAACUCAU---GCGGUGGGU---------- -...----...............(((-..((((((((((((.((((((.((((....))))((....))...)))))).).)))))....))---))))..)))---------- ( -28.00) >consensus _________GUUCGGAUUGAUUUGCU_UGCCGCAUUUUCAAGUCAAUUACACAUAUUUGUGGCAUUUGCGGCAAUCGAAUAUGAAAACCCAU___GCGGUGGGUCG______CA ..............((((((((((..............))))))))))...((((((((..((.......))...))))))))...((((((......)))))).......... (-20.49 = -19.77 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:51 2006