Locus 7273

Sequence ID 3R_DroMel_CAF1
Location 19,205,587 – 19,205,707
Length 120
Max. P 0.671133
window11769

overview

Window 9

Location 19,205,587 – 19,205,707
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.17
Mean single sequence MFE -48.33
Consensus MFE -29.20
Energy contribution -28.60
Covariance contribution -0.60
Combinations/Pair 1.43
Mean z-score -1.79
Structure conservation index 0.60
SVM decision value 0.29
SVM RNA-class probability 0.671133
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19205587 120 + 27905053
AGCCAGGAGUACUUAACGUGGGCAACAGUUUCGAAGGUGAUGAGCCCGUUUCGAUCAUGAGUUGCUGAGCUGCCUGGAGCUGGAGCAGAGCGGAUCUGCGCUUGUACUCCUGGCUAAGUG
((((((((((((....(((((((....(((.(....).)))..)))).....((((.((..(((((.((((......)))).).))))..)))))).)))...))))))))))))..... ( -49.90)
>DroVir_CAF1 22512 120 + 1
AACCCGGCGUACUUAGUGUUGGCAGCAACUUCGAUGGUGAUGAGCCCGUCUCAAUCAUCAGCUGCUGCGCUGCCUGCAACUGGAGCAGCGCCGAACGGCGUUUGUACUCCUGGCUCAGCG
..((.((.(((((((((((.((((((........((((((((((.....))).)))))))((....)))))))).)).)))))...((((((....)))))).)))).)).))....... ( -46.10)
>DroGri_CAF1 18380 120 + 1
ACCCUGGUGUACCCAUAGACGGCAGCAGCUUCGAUGGCGAUGAACCCGUCUCAAUCAUUAGCUGCUGCGCCGCCUGCAACUGCAGCAGUGCUGAACGCCUCUUGUACUCCUGGCUCAGUG
..((.((.((((....(((.((((((((((..(((.(.((((....)))).).)))...)))))))((((.((.(((....))))).)))).....)))))).)))).)).))....... ( -44.90)
>DroWil_CAF1 31071 120 + 1
AGCCAGGCGUACUCAGUGUGGGCAAUAGUUUCGAUGGCGAUGAUCCCGUCUCGAUCAUCAGCUGUUGGGCCGCUUGUAGCUGCAGUAGGGCUGAAUGCCUUUUGUACUCCUGACUGAGAG
((.((((.((((.((((....((((..(..(((((((((((((((.......))))))).))))))))..)..)))).))))....(((((.....)))))..)))).)))).))..... ( -41.20)
>DroMoj_CAF1 5904 120 + 1
AGCCCGGCGUGCUCAGCGUCGGCAGCAGCUUCGACGGCGACGAGCCCGUCUCGAUCAUUAGCUGCUGCGCCGCUUGCAACUGCAGCAGCGCCGAUCGCCGCUUGUACUCCUGGCUCAGUG
((((.((.((((..((((.(((((((((((..(((((.((((....))))))).))...)))))))))((.(((.((....))))).))......)).)))).)))).)).))))..... ( -55.60)
>DroAna_CAF1 2384 120 + 1
AGCCCGGAGUACUUAGUGUGGGCAGUAGCUUCGAGGGAGAAGAUCCCGUCUCGAUCAUCAGCUGCUGAGCGGCCUGCAACUGGAGCAGAGCGGACCUACGCUUGUACUCCUGACUCAGCG
.....(((((((..((((((((((((((((((((((((.....))))...)))).....))))))))..(.((((((.......)))).)).).)))))))).))))))).......... ( -52.30)
>consensus
AGCCCGGCGUACUCAGUGUGGGCAGCAGCUUCGAUGGCGAUGAGCCCGUCUCGAUCAUCAGCUGCUGCGCCGCCUGCAACUGCAGCAGAGCCGAACGCCGCUUGUACUCCUGGCUCAGUG
((((.((.((((..((((.((.((((((((..((..(.((((....)))).)..))...))))))))....((((((.......)))).))....)).)))).)))).)).))))..... (-29.20 = -28.60 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:50 2006