Locus 7270

Sequence ID 3R_DroMel_CAF1
Location 19,198,004 – 19,198,097
Length 93
Max. P 0.500000
window11765

overview

Window 5

Location 19,198,004 – 19,198,097
Length 93
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 87.86
Mean single sequence MFE -28.32
Consensus MFE -20.74
Energy contribution -20.94
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.55
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19198004 93 - 27905053
ACAUCGCCACAUCAAUGUACGUUUGGCACACGCAAAAUGCGUAAACUAGUUUG--UUUGGCUCCAGGAGAU-CCAUGGAGCGGGAGGAUUACUGGU
.....((((.((........)).))))..((((.....))))..((((((((.--(((.((((((((....-)).)))))).))).))..)))))) ( -31.20)
>DroSec_CAF1 9747 87 - 1
AC--------AUCAAUGUACGUUUGGCACACGCAAAAUGCGUAAACUAGUUUGCGCUUGGCUCCAGGAGAU-CCAUGGAGCGGGAGGAUUACUGGG
..--------.......(((((...((....)).....)))))..(((((...(.(((.((((((((....-)).)))))).).)))...))))). ( -25.80)
>DroSim_CAF1 10374 86 - 1
AC--------AUCAAUGUACGUUUGGCACACGCAAAAUGCGUAAACUAGUUUGCGCUUGGCUCCAGGAGAU-CCAUGGAGCGGGAGGAUUACUGG-
..--------.......(((((...((....)).....)))))..(((((...(.(((.((((((((....-)).)))))).).)))...)))))- ( -24.50)
>DroEre_CAF1 13178 91 - 1
ACAUCGGC-UAUCAAUGCCUGU-UGGCACACGCAAAAUGCGUAAACUAGUUUGU--UUGGCUCCAGGAGAU-CCAUGGAGCGGGAGGAUUACUGGG
........-......((((...-.)))).((((.....))))...(((((((.(--((.((((((((....-)).)))))).))).))..))))). ( -31.50)
>DroYak_CAF1 14252 94 - 1
ACAUCGCC-UAUCAAUGUGCGU-UGGAACACGCAAAAUGCGUAAACUAGUUUGUUUUUGGCUCCAGGAGAUUACAUGGAGCGGGAGGAUUACUGGG
.((.((((-.......).))).-))....((((.....))))...(((((...(((((.(((((((.......).)))))).)))))...))))). ( -28.60)
>consensus
ACAUCG_C__AUCAAUGUACGUUUGGCACACGCAAAAUGCGUAAACUAGUUUGC_CUUGGCUCCAGGAGAU_CCAUGGAGCGGGAGGAUUACUGGG
.............................((((.....))))...(((((......((.((((((((.....)).)))))).))......))))). (-20.74 = -20.94 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:46 2006