Locus 727

Sequence ID 3R_DroMel_CAF1
Location 2,597,829 – 2,597,930
Length 101
Max. P 0.904122
window1145

overview

Window 5

Location 2,597,829 – 2,597,930
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -38.37
Consensus MFE -24.53
Energy contribution -27.78
Covariance contribution 3.25
Combinations/Pair 1.07
Mean z-score -2.24
Structure conservation index 0.64
SVM decision value 1.03
SVM RNA-class probability 0.904122
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2597829 101 - 27905053
AGCGGAUUUAAGGACCCAGAUCCUGGCUGGGGGUCCUGCGGAGUAAAAGUUAUGGGCGGCAUCAACUGCAGAGCUAGAAGACUCCUUCUGGCUGGGCCCAA
(((..((((.(((((((....((.....)))))))))...))))....))).(((((.(((.....)))..(((((((((....)))))))))..))))). ( -40.20)
>DroSec_CAF1 61733 101 - 1
AGCGGAUCUAAGGACCCAGCUCCUGGCUGGUGGUCCUGCCGAGUAGAAGUUAUGGGCGGCAUCAACUGCAGAGCUAGAAGGCUCCUUCUGGCUGGGCCCAA
..(((.....((((((((((.....))))..)))))).)))...........(((((.(((.....)))..(((((((((....)))))))))..))))). ( -44.50)
>DroSim_CAF1 62325 101 - 1
AGCGGAUCUAAGGACCCAGCUCCUGGCUGGUGGUCCUGCGGAGUAAAAGUUAUGGGCGGCAUCAACUGCAGAGCUAGAAGGCUCCUUCUGGCUGGGCCCAA
(((...(((.((((((((((.....))))..))))))..)))......))).(((((.(((.....)))..(((((((((....)))))))))..))))). ( -43.30)
>DroEre_CAF1 65356 100 - 1
AGCGGAUCCCA-GACCCAGCUCCUGGCUGGGAGUCCUGCAGAGUAAAAGUUAUGGGCGGCAUCAACUGCAGAGCUAGAAGGCUCCUUCUGGCUGGGCCCAA
.((((((((((-(..((((...)))))))))).))).)).............(((((.(((.....)))..(((((((((....)))))))))..))))). ( -44.80)
>DroYak_CAF1 64518 96 - 1
AGCGGAUCUCAGGACCCAGCUCCAGGCUGGAAGUCCUGCAGAGUAAAAGUUAUGGGCGGCAGC-----CAGAGCUAGAUGGCUCCUUCUGGCCGGGACCAA
(((...((((((((((((((.....)))))..)))))).)))......))).(((.((((((.-----..(((((....)))))...)).))))...))). ( -37.20)
>DroAna_CAF1 55998 78 - 1
-------UUAAAGACCAAGGUCCU------------UGCAGAAUCAAAGUUAUAGGCGGCAUCAACUGCAGAGUUUGGUAGCA----GAGGCCGGGCCAAA
-------...........(((((.------------.((..(((....)))....))(((.((..((((........))))..----)).))))))))... ( -20.20)
>consensus
AGCGGAUCUAAGGACCCAGCUCCUGGCUGGGGGUCCUGCAGAGUAAAAGUUAUGGGCGGCAUCAACUGCAGAGCUAGAAGGCUCCUUCUGGCUGGGCCCAA
..........((((((((((.....)))))..)))))...............(((((.(((.....)))..(((((((((....)))))))))..))))). (-24.53 = -27.78 +   3.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:18 2006