Locus 7268

Sequence ID 3R_DroMel_CAF1
Location 19,195,111 – 19,195,203
Length 92
Max. P 0.808025
window11763

overview

Window 3

Location 19,195,111 – 19,195,203
Length 92
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 82.35
Mean single sequence MFE -31.26
Consensus MFE -17.23
Energy contribution -18.55
Covariance contribution 1.32
Combinations/Pair 1.14
Mean z-score -2.39
Structure conservation index 0.55
SVM decision value 0.64
SVM RNA-class probability 0.808025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19195111 92 - 27905053
CAUGGCAUUG------------------CAGCGUUAUCAUCUGGCC--AAGAAAUUCGUCUUGGUCAGGCGAAAC--ACCGGGCCAACAAUCAAAUUGCAUUAGCCGCAGAGUC
...(((.(((------------------(...(((.((..((((((--((((......))))))))))..)))))--....(((...((((...)))).....))))))).))) ( -28.50)
>DroSec_CAF1 7087 94 - 1
CAUGGCAUUG------------------CAGCGUUAUCAUCUGGCC--AAGAAAUUCGUCUUGGUCUGGCGAAACACACCGGGCCAACAAUCAAAUUGCAUUAGCCAUGGAGUC
((((((..((------------------(((...........(((.--((....)).)))(((((((((.(.....).)))))))))........)))))...))))))..... ( -30.50)
>DroSim_CAF1 7466 94 - 1
CAUGGCAUUG------------------CAGCGUUAUCAUCUGGCC--AAGAAAUUCGUCUUGGUCAGGCGAAACACACCGGGCCAACAAUCAAAUUGCAUUAGCCAUGGAGUC
((((((..((------------------(((.(((.((..((((((--((((......))))))))))..))))).....(......).......)))))...))))))..... ( -33.00)
>DroEre_CAF1 8442 103 - 1
------AAUGC-AUAAUGAAUUAUCCGGCAGCGUUAUCACCUGGCU--AAGAAAUUCGUCUUGGUCAGGCGAAAC--ACCGGGCCAACAAUCAAAUUGCAUUAGCCGUGGAGUC
------(((((-(...(((....(((((....(((.((.(((((((--((((......))))))))))).)))))--.))))).......)))...))))))............ ( -31.20)
>DroYak_CAF1 11117 112 - 1
UAUGGCAUUGCAAUUAUGAAUUAUACGCCAGCGUUAUCAUCUGGCUUCAAGAAAUUCGUCUUGGUCAGGCGAAAC--ACCGGGCCAACAAUCAAAUUGCAUUAGCCGUGGAGUC
((((((..(((((((.(((.......(((.(.(((.((..(((((..(((((......))))))))))..)))))--.)..)))......))))))))))...))))))..... ( -33.12)
>consensus
CAUGGCAUUG__________________CAGCGUUAUCAUCUGGCC__AAGAAAUUCGUCUUGGUCAGGCGAAAC__ACCGGGCCAACAAUCAAAUUGCAUUAGCCGUGGAGUC
((((((...................................(((((........(((((((.....)))))))........))))).((((...)))).....))))))..... (-17.23 = -18.55 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:44 2006