Locus 7267

Sequence ID 3R_DroMel_CAF1
Location 19,194,641 – 19,194,761
Length 120
Max. P 0.991025
window11762

overview

Window 2

Location 19,194,641 – 19,194,761
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.39
Mean single sequence MFE -23.03
Consensus MFE -21.15
Energy contribution -21.65
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.92
SVM decision value 2.24
SVM RNA-class probability 0.991025
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19194641 120 + 27905053
GCGCGCUGCCAAAAUGUAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGCGGUGAAGGCAAUUUUCUUU
(((((((....(((.....)))....))))).(((((((...............((((..(((((........)))))..)))).((((.......)))).))))))))).......... ( -23.80)
>DroSec_CAF1 6605 120 + 1
GCGCGCUGCCAAAAUGUAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGCGGUGAAGGCAAUUUUCUUC
(((((((....(((.....)))....))))).(((((((...............((((..(((((........)))))..)))).((((.......)))).))))))))).......... ( -23.80)
>DroSim_CAF1 6983 120 + 1
GCGCGCUGCCAAAAUGUAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGCGGUGAAGGCAAUUUUCUUU
(((((((....(((.....)))....))))).(((((((...............((((..(((((........)))))..)))).((((.......)))).))))))))).......... ( -23.80)
>DroEre_CAF1 7964 120 + 1
GCGCGCUGCCAAAAUGUAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGCGGUGAAGGCAAUUUUCUUU
(((((((....(((.....)))....))))).(((((((...............((((..(((((........)))))..)))).((((.......)))).))))))))).......... ( -23.80)
>DroYak_CAF1 10602 120 + 1
GCGCGCUGCCAAAAUGUAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGCGGUGAAGGCAAUUUUCUUA
(((((((....(((.....)))....))))).(((((((...............((((..(((((........)))))..)))).((((.......)))).))))))))).......... ( -23.80)
>DroAna_CAF1 12557 117 + 1
GCUAGCUGCCAAAAUGAAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGUGGUAAAGGCAAUUUUC---
....(((......((((....)))).)))((((((.(((...............((((..(((((........)))))..))))(((((.......)))))))))))))).......--- ( -19.20)
>consensus
GCGCGCUGCCAAAAUGUAUUUUCAUAAGCGCUUUUCACCAUUUCUUCCCAUCAAUUAUCAUAAAUACAAACAAAUUUGCAAUAAACUGCACAGCACGCAGCGGUGAAGGCAAUUUUCUUU
(((((((....(((.....)))....))))).(((((((...............((((..(((((........)))))..)))).((((.......)))).))))))))).......... (-21.15 = -21.65 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:43 2006