| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,191,668 – 19,191,774 |
| Length | 106 |
| Max. P | 0.731394 |
| Location | 19,191,668 – 19,191,774 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 85.20 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -22.17 |
| Energy contribution | -21.97 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.731394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19191668 106 - 27905053 CUUUGGAUUGACUGGGCCGAAUGAAAAUUUCAUUUACAACCUGGCCGGGGUAAUCGAGACUUUUGUUU-AGUUGAAGUUUCUGUUGGUUUUUUUUUUUUGAUUU--------UUU .....(((((.((.((((((((((.....)))))).......)))).)).)))))((((((((.....-....)))))))).......................--------... ( -23.21) >DroSec_CAF1 3640 98 - 1 CCUUGGAUUGACUGGGCCGAAUGAAAAUUUCAUUUACAACCUGGCCGGGGUAAUCGAGACUUUUGUUU-AGUUGAGGUUUCUGUUGCUUAUAUAUUU----------------UU ...........((.((((((((((.....)))))).......)))).))(((((.((((((((.....-....)))))))).)))))..........----------------.. ( -23.11) >DroSim_CAF1 3804 98 - 1 CCUUGGAUUGACUGGGCCAAAUGAAAAUUUCAUUUACAACCUGGCCGGGGUAAUCGAGACUUUUGUUU-AGUUGAGGUUUCUGUUGCUUAUAUUUUU----------------UU ...........((.((((((((((.....))))).......))))).))(((((.((((((((.....-....)))))))).)))))..........----------------.. ( -23.41) >DroEre_CAF1 4957 97 - 1 CCUUGCAUUGACUGGGCCAAAUGAAAAUUUCAUUUACAACCUGGCCGGGGUAAUCGAGACUUUUGUUU-CGCUGAGGUUUCUGUCGCUUUUAUUUAUU----------------- ((((((.....((.((((((((((.....))))).......))))).))......(((((....))))-))).)))).....................----------------- ( -23.21) >DroYak_CAF1 7572 115 - 1 CGUCGGAUUGCCUGGGCCAAAUGAAAAUUUCAUUUACAACCUGGCCGGGGUAAUCGAGACUUUUGUUUUAGUUGAGGUUUCUGUCGCUUUUAUUUUUUGUAUUUUUUUGUAUUUU ((.((((((((((.((((((((((.....))))).......))))).))))))))((((((((..........)))))))))).))............................. ( -30.71) >consensus CCUUGGAUUGACUGGGCCAAAUGAAAAUUUCAUUUACAACCUGGCCGGGGUAAUCGAGACUUUUGUUU_AGUUGAGGUUUCUGUUGCUUUUAUUUUUU_______________UU .....(((((.((.((((((((((.....))))).......))))).)).)))))((((((((..........)))))))).................................. (-22.17 = -21.97 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:35 2006