Locus 7262

Sequence ID 3R_DroMel_CAF1
Location 19,190,992 – 19,191,101
Length 109
Max. P 0.578567
window11752

overview

Window 2

Location 19,190,992 – 19,191,101
Length 109
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 91.93
Mean single sequence MFE -34.12
Consensus MFE -31.55
Energy contribution -31.18
Covariance contribution -0.37
Combinations/Pair 1.08
Mean z-score -1.33
Structure conservation index 0.92
SVM decision value 0.09
SVM RNA-class probability 0.578567
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19190992 109 + 27905053
AGCCCCUUGUUU-CUUUCAGUGCAACUCCAAUGGCAGCUUGGGUGUUGUAAAAAUACCAAAAAUACUUGGCAGCCGUGUUGGUCACGUAUUGGCCGGCUGUCUGGAGCAG
.(((....(((.-(.......).)))......))).((((.((((((.....))))))..........((((((((.((..((.....))..))))))))))..)))).. ( -34.10)
>DroSim_CAF1 3136 110 + 1
AACCCCCUGUUUUUUUUCAGUGCACCUGCAAUGGCAGCUUGGGUGUUGUAAAAAUACCAAAAAUACUUGGCAGCCGUGUUGGUCACGUAUUGGCCGGCUGUCUGGAGCAG
......(((((((.....((((...((((....))))....((((((.....)))))).....)))).((((((((.((..((.....))..)))))))))).))))))) ( -35.10)
>DroEre_CAF1 4308 109 + 1
AAAUCCUUGUUU-UUUUCAGUGCACCUCGUGUGGCAGCUUGGGUGUUGUAAAAAUACCAAAAAUACUUGGCAGCCGUGUUGAUCACGUAUUGGCCGGCUGUCUGGAGCAG
...(((.(((((-((..(((.((.((......))..)))))((((((.....)))))))))))))...((((((((.((..((.....))..)))))))))).))).... ( -33.20)
>DroYak_CAF1 6887 108 + 1
-AAUCCCUGUUU-UUUUAAGUGCAUCUCGCAUGGCAGCUUGGGUGUUGUAAAAAUACCAAAAAUACUUGACAGCCGUGUUGGUCACGUAUUGGCCGGCUGUCUGGAGCAG
-...........-......((((.....))))....((((.((((((.....))))))..........((((((((.((..((.....))..))))))))))..)))).. ( -34.10)
>consensus
AAACCCCUGUUU_UUUUCAGUGCACCUCCAAUGGCAGCUUGGGUGUUGUAAAAAUACCAAAAAUACUUGGCAGCCGUGUUGGUCACGUAUUGGCCGGCUGUCUGGAGCAG
....................(((..........)))((((.((((((.....))))))..........((((((((.((..((.....))..))))))))))..)))).. (-31.55 = -31.18 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:34 2006