Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,190,648 – 19,190,762 |
Length | 114 |
Max. P | 0.999834 |
Location | 19,190,648 – 19,190,762 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 97.54 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -23.57 |
Energy contribution | -24.40 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.86 |
SVM decision value | 1.31 |
SVM RNA-class probability | 0.940729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19190648 114 + 27905053 UCGGCCAGUUGGCCAUAAAAGCAUUUUAAUUUCUUAAUUUACCACAAACUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAGUGGCAUUCGCAUU ..((((....))))......((...................................((((((...........)))))).........(((((......)))))....))... ( -28.50) >DroSec_CAF1 2774 114 + 1 UCGGCCUGUUGGCCAUAAAAGCAUUUUAAUUUCUUAAUUUACCACAAACUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAGUGGCAUUCGCAUU ..((((....))))......((...................................((((((...........)))))).........(((((......)))))....))... ( -28.70) >DroSim_CAF1 2790 114 + 1 UCGGCCAGUUGGCCAUAAAAGCAUUUUAAUUUCUUAAUUUACCACAAACUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAGUGGCAUUCGCAUU ..((((....))))......((...................................((((((...........)))))).........(((((......)))))....))... ( -28.50) >DroEre_CAF1 4006 114 + 1 UCGGCCAGUUGCCCAUAAAAGCAUUUUAAUUUCUUAAUUUACCACAAACUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAGUGGCAUUCGCAUU ..((((((.(((........)))................((((.....((((.....)))).....))))..))))))....((((((((((((......))))).)).))))) ( -24.10) >DroYak_CAF1 6543 114 + 1 UUGGCCAGUUGGCCAUAAAAGCAUUUUAAUUUCUUAAUUUACCACAAACUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAGUGGCAUUCGCAUU .(((((....))))).....((...................................((((((...........)))))).........(((((......)))))....))... ( -28.90) >DroAna_CAF1 9262 114 + 1 UUGGCGAGUUGUCCAUAAAAUCAUUUUAAUUUCUUAAUUUACCACAACCUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAAUGGCAUUCGCAUU ...((((((.(.((((.........................................((((((...........))))))....((((((....)))))))))))))))))... ( -25.60) >consensus UCGGCCAGUUGGCCAUAAAAGCAUUUUAAUUUCUUAAUUUACCACAAACUAUAAAUCAUGGCCUUAGGUGUUUUGGCCAUAUAAUGUAAGCCACCUUGCAGUGGCAUUCGCAUU ..((((....))))......((...................................((((((...........)))))).........(((((......)))))....))... (-23.57 = -24.40 + 0.83)
Location | 19,190,648 – 19,190,762 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 97.54 |
Mean single sequence MFE | -32.67 |
Consensus MFE | -30.03 |
Energy contribution | -30.50 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.06 |
Mean z-score | -3.16 |
Structure conservation index | 0.92 |
SVM decision value | 4.20 |
SVM RNA-class probability | 0.999834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19190648 114 - 27905053 AAUGCGAAUGCCACUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGUUUGUGGUAAAUUAAGAAAUUAAAAUGCUUUUAUGGCCAACUGGCCGA ...((((((((((((....))))))........(((((((...........))))))).......))))))((((..((((....))))..))))....(((((....))))). ( -34.40) >DroSec_CAF1 2774 114 - 1 AAUGCGAAUGCCACUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGUUUGUGGUAAAUUAAGAAAUUAAAAUGCUUUUAUGGCCAACAGGCCGA ...((((((((((((....))))))........(((((((...........))))))).......))))))((((..((((....))))..))))....(((((....))))). ( -34.10) >DroSim_CAF1 2790 114 - 1 AAUGCGAAUGCCACUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGUUUGUGGUAAAUUAAGAAAUUAAAAUGCUUUUAUGGCCAACUGGCCGA ...((((((((((((....))))))........(((((((...........))))))).......))))))((((..((((....))))..))))....(((((....))))). ( -34.40) >DroEre_CAF1 4006 114 - 1 AAUGCGAAUGCCACUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGUUUGUGGUAAAUUAAGAAAUUAAAAUGCUUUUAUGGGCAACUGGCCGA ...((((((((((((....))))))........(((((((...........))))))).......))))))(((...((((....))))..(((((....)))))....))).. ( -31.60) >DroYak_CAF1 6543 114 - 1 AAUGCGAAUGCCACUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGUUUGUGGUAAAUUAAGAAAUUAAAAUGCUUUUAUGGCCAACUGGCCAA ...((((((((((((....))))))........(((((((...........))))))).......))))))((((..((((....))))..))))....(((((....))))). ( -35.10) >DroAna_CAF1 9262 114 - 1 AAUGCGAAUGCCAUUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGGUUGUGGUAAAUUAAGAAAUUAAAAUGAUUUUAUGGACAACUCGCCAA ...((((..((((((....))))))........(((((((...........)))))))........(((((.(((((((((....))))......))))).).))))))))... ( -26.40) >consensus AAUGCGAAUGCCACUGCAAGGUGGCUUACAUUAUAUGGCCAAAACACCUAAGGCCAUGAUUUAUAGUUUGUGGUAAAUUAAGAAAUUAAAAUGCUUUUAUGGCCAACUGGCCGA ...((((((((((((....))))))........(((((((...........))))))).......))))))((((..((((....))))..))))....(((((....))))). (-30.03 = -30.50 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:33 2006