Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,586,305 – 2,586,400 |
Length | 95 |
Max. P | 0.639912 |
Location | 2,586,305 – 2,586,400 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 79.64 |
Mean single sequence MFE | -34.22 |
Consensus MFE | -18.58 |
Energy contribution | -21.11 |
Covariance contribution | 2.53 |
Combinations/Pair | 1.14 |
Mean z-score | -1.97 |
Structure conservation index | 0.54 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2586305 95 + 27905053 UUUGCUUUUGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG------------CCGC-------UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC ...(((((((........)))))))((((((((((((((.((((............)------------)).)-------.)))))).))))))))..(((........))).. ( -34.10) >DroSec_CAF1 50082 95 + 1 UUUGCUUUUGGGAUCUGGCAUGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG------------CUGC-------UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC ...((((.((........)).))))((((((((((((((..(((...((.......)------------).))-------))))))).))))))))..(((........))).. ( -30.60) >DroSim_CAF1 50663 95 + 1 UUUGCUUUUGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG------------CCGC-------UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC ...(((((((........)))))))((((((((((((((.((((............)------------)).)-------.)))))).))))))))..(((........))).. ( -34.10) >DroEre_CAF1 53323 101 + 1 UUUGCUCUCGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUCCUGCCACC------GCCA-------CUGCCAACUGGCAACAAAAGUCAAUUCACAGACAC ((((......((...((((((((((..((.(((........)))...)).))))))))))..------.)).-------.((((....)))).)))).(((........))).. ( -35.40) >DroYak_CAF1 52928 114 + 1 UUUGCUCUUGGGAUCCGGCAGGAGCUUGUUGCUGUUGGGCGGGCUUUGCUGCUCCUGCUUCUGCUUCUGCCGCUGCCAACUGGCAACUGGCAACAAAAGUCAAUUCACAGACAC .(((((.((((.(..((((((((((.....((....((((((......))))))..))....)))))))))).).))))..))))).((....))...(((........))).. ( -41.50) >DroPer_CAF1 60301 86 + 1 UUUGCUUUGUGGAUGUGGCAAG---UAGUUUCUGUG-----------GCAACUUCUG------------CCACUGC--UCUGCCAACUGGCAACAAAAGUCAAUUCAUAGGCAG ..(((((.((((((.((((.((---.(((....(((-----------(((.....))------------)))).))--)))(((....))).......))))))))))))))). ( -29.60) >consensus UUUGCUUUUGGGAUCUGGCAGGAGCUUGUUGCUGUUGGCCGGGCUUUGCUGCUUCUG____________CCGC_______UGCCAACUGGCAACAAAAGUCAAUUCACAGACAC ...(((((((........)))))))((((((((((((((.((((......))))...........................)))))).))))))))..(((........))).. (-18.58 = -21.11 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:16 2006