Locus 7259

Sequence ID 3R_DroMel_CAF1
Location 19,165,925 – 19,166,015
Length 90
Max. P 0.999819
window11744

overview

Window 4

Location 19,165,925 – 19,166,015
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 96.00
Mean single sequence MFE -32.62
Consensus MFE -31.94
Energy contribution -31.54
Covariance contribution -0.40
Combinations/Pair 1.07
Mean z-score -2.25
Structure conservation index 0.98
SVM decision value 4.16
SVM RNA-class probability 0.999819
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19165925 90 + 27905053
GUGACUUUGCGGUUCUUCUUGAGCCUCAUGGUGCUAACUUGGCCCGAAUGGUUGCCGCUGUUGCCGAUGCCGUUCAAUUGGCUAAGUAUC
((.(((.((.(((((.....))))).)).)))))..((((((((.(((((((..(.((....)).)..)))))))....))))))))... ( -32.60)
>DroSec_CAF1 48323 90 + 1
GUGACUUUGCGGUUCUUCUUGAGCCUCAUGGUGCUAACUUGGCCCGAAUGGUUGCCGCUGUUGCCAAUGCCGUUCAGUUGGCUAAGUAUC
((.(((.((.(((((.....))))).)).)))))..((((((((.(((((((....((....))....)))))))....))))))))... ( -32.40)
>DroSim_CAF1 49472 90 + 1
GUGACUUUGCGGUUCUUCUUGAGCCUCAUGGUGCUAACUUGGCCCGAAUGGUUGCCGCUGUUGCCAAUGCCGUUCAGUUGGCUAAGUAUC
((.(((.((.(((((.....))))).)).)))))..((((((((.(((((((....((....))....)))))))....))))))))... ( -32.40)
>DroEre_CAF1 49982 90 + 1
GUGACUUUGCGGUUCUUCUUGAGCCUCAUGGUGCUGACUUGGCCCGAAUGGCUGCUGCUGUUGCCAAUGCCGUUCAGUUGGCUGAGGAUC
((.(((.((.(((((.....))))).)).)))))...((..(((.(((((((....((....))....)))))))....)))..)).... ( -32.60)
>DroYak_CAF1 51284 90 + 1
GUGACUUUGCGGUUCUUCUUGAGCCUCAUGGUGCUAACUUGGCCCGAAUGGCUGCUGCUGUUGCCAAUGCCGUUCAAUUGGCUAAGGAUC
((.(((.((.(((((.....))))).)).)))))...(((((((.(((((((....((....))....)))))))....))))))).... ( -33.10)
>consensus
GUGACUUUGCGGUUCUUCUUGAGCCUCAUGGUGCUAACUUGGCCCGAAUGGUUGCCGCUGUUGCCAAUGCCGUUCAGUUGGCUAAGUAUC
((.(((.((.(((((.....))))).)).)))))...(((((((.(((((((....((....))....)))))))....))))))).... (-31.94 = -31.54 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:26 2006