Locus 7258

Sequence ID 3R_DroMel_CAF1
Location 19,154,206 – 19,154,306
Length 100
Max. P 0.898859
window11743

overview

Window 3

Location 19,154,206 – 19,154,306
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.48
Mean single sequence MFE -19.43
Consensus MFE -12.24
Energy contribution -12.08
Covariance contribution -0.16
Combinations/Pair 1.10
Mean z-score -1.79
Structure conservation index 0.63
SVM decision value 1.01
SVM RNA-class probability 0.898859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19154206 100 + 27905053
ACAAAAGCGGUUUGGUCAGCUGUUCAAACUGCUACCAACAACCAGCC-------GCCUGCCCACUCCCCCAAAUAGAGGCGAGAGUCCUCCCGACUACCCA-CC------------ACCC
......((((((((((.(((.((....)).))))))))......)))-------)).......(((((.(.....).)).)))((((.....)))).....-..------------.... ( -22.30)
>DroSec_CAF1 36865 83 + 1
GCAAAAGCGGUUUGGUCAGCUGUUCAAACUGCUACCA---ACCAGAC-------GCCUGCCCACUCCCCCAAAUGGA-------GUCCU-------ACCCC-CC------------ACCC
(((...(((.((((((.(((.((....)).)))....---)))))))-------)).)))..(((((.......)))-------))...-------.....-..------------.... ( -18.70)
>DroSim_CAF1 37163 83 + 1
ACAAAAGCGGUUUGGUCAGCUGUUCAAACUGCUACCA---ACCAGCC-------GCCUGCCCACUCCCCCAAAUGGA-------GUCCU-------ACCCC-CC------------ACCC
......((((((((((.(((.((....)).)))))))---)...)))-------))......(((((.......)))-------))...-------.....-..------------.... ( -21.20)
>DroYak_CAF1 39193 97 + 1
ACAAAAGCGGUUUGGUCAGCUGUUCAAACUGCUACCA---ACCAGCC-------GCCUGCCCACUCCCCCAAAUAGACCC-----UCUU-------ACCCC-CCUUGAAACACCUGACCC
......((((((((((.(((.((....)).)))))))---)...)))-------))........................-----....-------.....-.................. ( -16.40)
>DroAna_CAF1 33495 95 + 1
ACAAAAGUGGUUUGGUCAGCUGUUCAAACUGCUACCA---ACCGACUGAACCAAGCCAGCCCACUCCCCCAAGCUGCCA----------CCCCACCGCCCAGCC------------ACCC
......((((((.(((..((((((((...........---......)))))..)))((((............))))...----------.......))).))))------------)).. ( -18.53)
>consensus
ACAAAAGCGGUUUGGUCAGCUGUUCAAACUGCUACCA___ACCAGCC_______GCCUGCCCACUCCCCCAAAUAGA_______GUCCU_______ACCCC_CC____________ACCC
.....((((((((((........))))))))))....................................................................................... (-12.24 = -12.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:25 2006