| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,138,129 – 19,138,259 |
| Length | 130 |
| Max. P | 0.996214 |
| Location | 19,138,129 – 19,138,221 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.73 |
| Mean single sequence MFE | -20.30 |
| Consensus MFE | -11.66 |
| Energy contribution | -12.97 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.57 |
| SVM decision value | 2.67 |
| SVM RNA-class probability | 0.996214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19138129 92 - 27905053 -------------UCUUGGUUUUGCACCAAGAUAAACAGAUUUAUAAAAGAGAUUGUAGAAAUGCAACUCAAUAAAUUUGAAUCAAUU---------UA---UUUGUACACUAUAUA -------------(((((((.....)))))))....(((((((((....(((.(((((....)))))))).)))))))))........---------..---............... ( -21.40) >DroSec_CAF1 21005 92 - 1 -------------UCUUGGUUUUGCACCAAGAUAAGCAGAUUUAUAAAAGAGAUUGUAUAAAUGCAGUCCAAUAUAUUUGUAUCUGUU---------UA---UUUAUACACUAUAUA -------------(((((((.....)))))))(((((((((.((((...(.(((((((....))))))))..)))).....)))))))---------))---............... ( -21.90) >DroSim_CAF1 21458 92 - 1 -------------UCUUGGUUUUGCACCAAGAUAAGCAGAUUUAUAAAAGAUACUGUAGAAAUGCAACCUAAUAUAUUUGCAUCUGUU---------UA---UUUAUACACUAUAUA -------------(((((((.....)))))))((((((((((((((........))))))..(((((..........)))))))))))---------))---............... ( -19.40) >DroYak_CAF1 22312 117 - 1 CACGGAUAAAUGUUCUCAUUAUUGCACUAAGAUAAGCGGAUUUAUAAAAGAGAUUGUAGAAAUGCAAAUCUUUCUGCUUGAAUUUGGAUACUAUAAAUACUUUUUGAAUACUAUAAA ..........(((((..(((...(((..(((((..(((..(((((((......)))))))..)))..)))))..)))...)))..)))))........................... ( -18.50) >consensus _____________UCUUGGUUUUGCACCAAGAUAAGCAGAUUUAUAAAAGAGAUUGUAGAAAUGCAACCCAAUAUAUUUGAAUCUGUU_________UA___UUUAUACACUAUAUA .............(((((((.....)))))))..((((((((((.........(((((....)))))...........))))))))))............................. (-11.66 = -12.97 + 1.31)
| Location | 19,138,154 – 19,138,259 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.10 |
| Mean single sequence MFE | -16.74 |
| Consensus MFE | -4.22 |
| Energy contribution | -4.66 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.25 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.528616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19138154 105 + 27905053 CAAAUUUAUUGAGUUGCAUUUCUACAAUCUCUUUUAUAAAUCUGUUUAUCUUGGUGCAAAACCAAGA--------------AAAGUUUUCUUU-UUUCUAUUCGAGUUCACUGAAAACAU ((.((((((.((((((........))).)))....)))))).))....(((((((.....)))))))--------------...((((((...-.(((.....)))......)))))).. ( -19.70) >DroSec_CAF1 21030 105 + 1 CAAAUAUAUUGGACUGCAUUUAUACAAUCUCUUUUAUAAAUCUGCUUAUCUUGGUGCAAAACCAAGA--------------AAAGUUUUCUUU-UUUCUAUUUGAGUUCAAUAAAAAAAC ......(((((((((..(((((((.((....)).)))))))..((((.(((((((.....)))))))--------------.)))).......-..........)))))))))....... ( -21.90) >DroSim_CAF1 21483 106 + 1 CAAAUAUAUUAGGUUGCAUUUCUACAGUAUCUUUUAUAAAUCUGCUUAUCUUGGUGCAAAACCAAGA--------------AAAGUUUUCUUUUUUUCUAUUUGAGUUCACUAAAAACAU ((((((((..((((.((.........))))))..)))).....((((.(((((((.....)))))))--------------.))))..............))))................ ( -16.50) >DroEre_CAF1 21549 79 + 1 CAAAUUGAAUGUGAUGCAUUAGUAC--------------------------UGGUGCAAUAACGAUA--------------UAAGUUUUCAAC-UUUCUAUUUAAAUUCACAAAAAACAU .........((((((((((((....--------------------------))))))).....((((--------------.((((.....))-))..)))).....)))))........ ( -12.10) >DroYak_CAF1 22349 119 + 1 CAAGCAGAAAGAUUUGCAUUUCUACAAUCUCUUUUAUAAAUCCGCUUAUCUUAGUGCAAUAAUGAGAACAUUUAUCCGUGUUAAGCUUUAAAC-UUUCUAUUCAAAUUCACUAAAAACAU .....((((((.((.((..........((((..((((.....((((......))))..)))).))))((((......))))...))...)).)-)))))..................... ( -13.50) >consensus CAAAUAUAUUGAGUUGCAUUUCUACAAUCUCUUUUAUAAAUCUGCUUAUCUUGGUGCAAAACCAAGA______________AAAGUUUUCUUU_UUUCUAUUUGAGUUCACUAAAAACAU ................................................(((((((.....)))))))..................................................... ( -4.22 = -4.66 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:23 2006