Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,137,187 – 19,137,309 |
Length | 122 |
Max. P | 0.804110 |
Location | 19,137,187 – 19,137,295 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.09 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -15.04 |
Energy contribution | -16.84 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.23 |
Mean z-score | -2.13 |
Structure conservation index | 0.62 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804110 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19137187 108 + 27905053 CCUAG-------UGCAAUCUAAGCAAUUUUCUUAUCAAUUUGAGGCUAUUUUUAGUUUGCAAAACCAAGCCC--CCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGU .....-------(((((.(((((.(((..(((((......)))))..)))))))).)))))...........--...((((((.((((((((((.....))))))))))..)))))) ( -24.70) >DroSec_CAF1 20031 115 + 1 CCUAGCUUACGGCGCCAGAAAAACAAUUUUCUUAUCAAUUGUUGGCUAUUUUAAGUUUGCAAAACCAAGCCC--CUCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGU ..........(((...((((((....))))))......((((..(((......)))..))))......))).--...((((((.((((((((((.....))))))))))..)))))) ( -24.10) >DroSim_CAF1 20478 114 + 1 CCUAGCUUACGGCGC-AGCUAAGUAAUUUUCUUAUCAAUUGUUUUCUAUUUUAAGUUUGCAAAGCCAAGCCC--CUCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGU ....((((..(((..-.(.((((.......)))).)..((((...((......))...)))).)))))))..--...((((((.((((((((((.....))))))))))..)))))) ( -23.10) >DroEre_CAF1 20667 109 + 1 -------GACGGCGC-AGUUAAGCAAUUUUCUUAUCAAUUGCGAACUAUUUUUAUUUUGCAACCCAACCCCCGCGCCAUCAUAUCUUUGUAGGUCAUGCAUCUGUAAAGUUUAUGGC -------...(((((-.(.((((.......)))).)..(((((((.((....)).)))))))..........))))).(((((.((((((((((.....))))))))))..))))). ( -25.50) >DroYak_CAF1 21260 109 + 1 -------AACGGCGC-AGUUAAGCAAUUUUCUUAUCAAUUGCAAACUAUUUUUAUUUUGCAAAACCAAGCCCCCCCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGC -------...(((((-......))..............(((((((.((....)).)))))))......))).......(((((.((((((((((.....))))))))))..))))). ( -24.00) >consensus CCUAG__UACGGCGC_AGCUAAGCAAUUUUCUUAUCAAUUGCAAACUAUUUUUAGUUUGCAAAACCAAGCCC__CCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGU ..........(((((.......))..............((((((((((....))))))))))......))).......(((((.((((((((((.....))))))))))..))))). (-15.04 = -16.84 + 1.80)
Location | 19,137,218 – 19,137,309 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 85.67 |
Mean single sequence MFE | -19.52 |
Consensus MFE | -14.68 |
Energy contribution | -15.96 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.20 |
Mean z-score | -1.61 |
Structure conservation index | 0.75 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19137218 91 + 27905053 UUUGAGGCUAUUUUUAGUUUGCAAAACCAAGCCC--CCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUU-UUCCAGUUCUAGG ((((((((((....)))))).)))).((.((..(--...((((((.((((((((((.....))))))))))..)))))).-.....)..)).)) ( -18.00) >DroSec_CAF1 20069 91 + 1 UUGUUGGCUAUUUUAAGUUUGCAAAACCAAGCCC--CUCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUU-UUGCAAUUCUAAG ...............((.(((((((((((.....--..........((((((((((.....))))))))))....)))))-))))))..))... ( -20.31) >DroSim_CAF1 20515 91 + 1 UUGUUUUCUAUUUUAAGUUUGCAAAGCCAAGCCC--CUCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUU-UUGCAGUUCUAGG ...............((.(((((((((((.....--..........((((((((((.....))))))))))....)))))-))))))..))... ( -20.01) >DroEre_CAF1 20697 94 + 1 UUGCGAACUAUUUUUAUUUUGCAACCCAACCCCCGCGCCAUCAUAUCUUUGUAGGUCAUGCAUCUGUAAAGUUUAUGGCUUUCGCAGUUCUGCG (((((((.((....)).)))))))............(((((.....((((((((((.....))))))))))...)))))...((((....)))) ( -20.90) >DroYak_CAF1 21290 93 + 1 UUGCAAACUAUUUUUAUUUUGCAAAACCAAGCCCCCCCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGCU-UCGCAGUUCUAGG (((((((.((....)).)))))))......((.....((((.....((((((((((.....))))))))))...))))..-..))......... ( -18.40) >consensus UUGCAAACUAUUUUUAGUUUGCAAAACCAAGCCC__CCCAUCAUAUCUUUAUAGGUCAUGCAUCUGUAAAGUUUAUGGUU_UUGCAGUUCUAGG ((((((((((....))))))))))................(((((.((((((((((.....))))))))))..)))))................ (-14.68 = -15.96 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:21 2006