Locus 7254

Sequence ID 3R_DroMel_CAF1
Location 19,125,684 – 19,125,786
Length 102
Max. P 0.841158
window11736 window11737

overview

Window 6

Location 19,125,684 – 19,125,786
Length 102
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 90.62
Mean single sequence MFE -29.00
Consensus MFE -21.64
Energy contribution -21.32
Covariance contribution -0.31
Combinations/Pair 1.16
Mean z-score -2.10
Structure conservation index 0.75
SVM decision value 0.51
SVM RNA-class probability 0.762699
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19125684 102 + 27905053
GCUGAUCGCUUGGGGGGACCUUUAGCUGUAAUUAAAUCUAAGAUCAAUGGCAACACUUUCCGUUAAACCAGAAAUGAUCAAUGUUGGCCCUCAAGUGAUCUU
...(((((((((((((..((.((((.(........).))))(((((.((....)).((((.(......).)))))))))......))))))))))))))).. ( -30.10)
>DroSec_CAF1 8587 101 + 1
GCUGAUCGCUUAGGGGGACCUUUGGCUGUAAUUAGAUCUAAGAUCAAUAGCAAUACUUUCCGUUAAACCGGAAAUGAUC-AUGUUGGUCAUCAAGUGAUCUU
...(((((((((((....)))....................((((((((.......((((((......)))))).....-.))))))))...)))))))).. ( -29.42)
>DroEre_CAF1 8914 100 + 1
GAUGAUCGCUUUGGGGGACCU-CGGCUGUAAUUAGAUCUAAGAUCAAUAGCAACACUUUCCGUUAAACCGGAAAUGAUC-AUGCUGCCCAUCAAGUGAUCUU
...((((((((...(((....-(((((((.(((.((((...))))))).))).((.((((((......))))))))...-..)))))))...)))))))).. ( -29.20)
>DroYak_CAF1 9151 100 + 1
GAUGAUCGCUGAGGGGGAUCU-CAGCUGUAAUUAGAUCUAAGAUCAAUAGCAACACUUUCCGUUAAACCGGAAAUGAUC-AUGUUGGCCAUCGAGUGAUCUU
...(((((((((.((((((((-.(.......).))))))....((((((....((.((((((......))))))))...-.)))))))).)).))))))).. ( -27.30)
>consensus
GAUGAUCGCUUAGGGGGACCU_CAGCUGUAAUUAGAUCUAAGAUCAAUAGCAACACUUUCCGUUAAACCGGAAAUGAUC_AUGUUGGCCAUCAAGUGAUCUU
...((((((((.((....))..(((((((.(((.((((...))))))).))).((.((((((......))))))))......))))......)))))))).. (-21.64 = -21.32 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 19,125,684 – 19,125,786
Length 102
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 90.62
Mean single sequence MFE -28.93
Consensus MFE -21.02
Energy contribution -20.65
Covariance contribution -0.37
Combinations/Pair 1.21
Mean z-score -2.77
Structure conservation index 0.73
SVM decision value 0.75
SVM RNA-class probability 0.841158
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19125684 102 - 27905053
AAGAUCACUUGAGGGCCAACAUUGAUCAUUUCUGGUUUAACGGAAAGUGUUGCCAUUGAUCUUAGAUUUAAUUACAGCUAAAGGUCCCCCCAAGCGAUCAGC
..((((.((((.(((((...........((((((......))))))..((((..(((((........)))))..))))....)))))...)))).))))... ( -28.10)
>DroSec_CAF1 8587 101 - 1
AAGAUCACUUGAUGACCAACAU-GAUCAUUUCCGGUUUAACGGAAAGUAUUGCUAUUGAUCUUAGAUCUAAUUACAGCCAAAGGUCCCCCUAAGCGAUCAGC
..((((.((((..((((.....-.....((((((......)))))).....((((((((((...)))).)))...)))....))))....)))).))))... ( -23.80)
>DroEre_CAF1 8914 100 - 1
AAGAUCACUUGAUGGGCAGCAU-GAUCAUUUCCGGUUUAACGGAAAGUGUUGCUAUUGAUCUUAGAUCUAAUUACAGCCG-AGGUCCCCCAAAGCGAUCAUC
..((((.(((..((((..((..-..((.((((((......))))))(.((((..(((((((...)))).)))..))))))-).))..))))))).))))... ( -28.80)
>DroYak_CAF1 9151 100 - 1
AAGAUCACUCGAUGGCCAACAU-GAUCAUUUCCGGUUUAACGGAAAGUGUUGCUAUUGAUCUUAGAUCUAAUUACAGCUG-AGAUCCCCCUCAGCGAUCAUC
..((((..((((((((.(((((-.....((((((......))))))))))))))))))).................((((-((......))))))))))... ( -35.00)
>consensus
AAGAUCACUUGAUGGCCAACAU_GAUCAUUUCCGGUUUAACGGAAAGUGUUGCUAUUGAUCUUAGAUCUAAUUACAGCCA_AGGUCCCCCUAAGCGAUCAGC
..((((..(((((((.((((((......((((((......))))))))))))))))))).....(((((............))))).........))))... (-21.02 = -20.65 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:19 2006