Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,106,883 – 19,106,974 |
Length | 91 |
Max. P | 0.759815 |
Location | 19,106,883 – 19,106,974 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 76.35 |
Mean single sequence MFE | -25.97 |
Consensus MFE | -14.08 |
Energy contribution | -14.19 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.21 |
Mean z-score | -1.81 |
Structure conservation index | 0.54 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19106883 91 - 27905053 AUACAAGUUUUCCGCCGCUGGUAAUAACUCAUUU-----GAACAUA-GUGGCAACUCUGUGCAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA-C-AG ......((((((.(....(((((((((..((.((-----(..((((-(.(....).))))).....))).))..)))))))))....).)))))-)-.. ( -23.10) >DroVir_CAF1 24155 93 - 1 UUAG---CUUAGCUCUGCCGGCAAGCGCUGGUAUGAAACGAGUAG-UCUGGCAACGCUGUCGGGAACAGCUGCUU--UUGCCAUUCACACAAAAAACAG ...(---(((...(((((((((....))))))).))...)))).(-..((((((.((.((.(....).)).))..--))))))..)............. ( -25.90) >DroSec_CAF1 22829 91 - 1 AUGCAAGUUUGCCGCCGCUUGUAAUUACUUAUUU-----GAACAUA-CUGGCAACGCUGUGAAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA-C-AG .(((((((........)))))))..........(-----(((....-.((((((((((((.....)))))......)))))))))))(((....-)-)) ( -26.50) >DroSim_CAF1 23506 91 - 1 AUGCAAGUUUGCCGCCGCUUGUAAUUACUUAUUU-----GAACAUA-CUGGCAACGCUGUGCAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA-C-AG .(((((((........)))))))..........(-----(((....-.((((((((((((.....)))))......)))))))))))(((....-)-)) ( -26.50) >DroEre_CAF1 23239 92 - 1 AUAAAAGUUCUCCGCCGCUGGUAUUAACUUAUUU-----GAGCACGUCUGGCAACGCUAUGCAGCACAGCUGUGUAGUUGCCAUUCACUGGAAA-C-CG ......(((.(((...(((.(.((......)).)-----.)))..(..(((((..((((((((((...)))))))))))))))..)...)))))-)-.. ( -26.40) >DroYak_CAF1 23182 92 - 1 AUAAAAGUUCUCCGCCGCUGGUAUUAACUUAUUU-----GAGCAUGUCUGGCAACGCUGUGCAACACAGCUGUGUAGUUGCCAUUCACUGGGAA-C-AG ......((((.((...(((.(.((......)).)-----.))).((..(((((((((((((...))))))......)))))))..))..)))))-)-.. ( -27.40) >consensus AUACAAGUUUUCCGCCGCUGGUAAUAACUUAUUU_____GAACAUA_CUGGCAACGCUGUGCAAAACAGCUGUAUUGUUGCCAUUCACUGGAAA_C_AG ......((((.........(((....)))..........)))).....((((((((((((.....)))))......)))))))................ (-14.08 = -14.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:15 2006