| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,102,730 – 19,102,837 |
| Length | 107 |
| Max. P | 0.596262 |
| Location | 19,102,730 – 19,102,837 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.09 |
| Mean single sequence MFE | -23.33 |
| Consensus MFE | -14.94 |
| Energy contribution | -15.07 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.596262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19102730 107 + 27905053 CUAUU-AGUGUAAUAUUUAUGGGCGUGUGUAAUCAACAGGUAAAGCAGAUAGUUUAGUUUGCUUUAAGCAUAGUUUACCCCCACGAGCAUAGAUC-UAAUUUAAUAGUA (((((-((......(((((((..((((.((((........((((((((((......))))))))))........))))...))))..))))))).-....))))))).. ( -26.69) >DroEre_CAF1 18919 105 + 1 CUAUCAAGUGUAAUAUUUAUGGGCGUGUGCAAUCAACAGGUAGAACAAGUUGGUUGGUUUGCUUCAACCAU----UUCCCCCAUAAACGUAGAACACAAUUUAAAAGUG .......((((..(((((((((((.(((.......))).)..........(((((((......))))))).----....)))))))..)))..))))............ ( -23.60) >DroYak_CAF1 18931 95 + 1 CUAUUAAGUGUAAUAUUCUUGGGCGAGUGCAAUCAACAGGUA---------GGUUAGUUUGCUUUAACCAA----UUCCCCUAAAAGCAUAGAUC-UAAUUUAAUAGUC (((((((((....(((.((((((.((((...(((....))).---------((((((......)))))).)----))))))...))).)))....-..))))))))).. ( -19.70) >consensus CUAUUAAGUGUAAUAUUUAUGGGCGUGUGCAAUCAACAGGUA_A_CA__U_GGUUAGUUUGCUUUAACCAU____UUCCCCCAAAAGCAUAGAUC_UAAUUUAAUAGUA (((((((((....((((((((((.(((....(((....)))..........((((((......))))))......))).)))))))..))).......))))))))).. (-14.94 = -15.07 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:14 2006