| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,101,755 – 19,101,863 |
| Length | 108 |
| Max. P | 0.646018 |
| Location | 19,101,755 – 19,101,863 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 92.09 |
| Mean single sequence MFE | -38.22 |
| Consensus MFE | -30.22 |
| Energy contribution | -30.58 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19101755 108 - 27905053 ACACCAUUAUUGUGGUUGAGCGGAUGACGAAAGGUGG---CCUGGUCGAGAGGGUAUCAGGCCUU-UUGGCCAAUGGAAUGAGCCCGAGGAUGCGUGAUGAG-GGGACAGAAG .(((((((.(((.((((.(..((....(....)....---))(((((((((((.(....).))))-)))))))......).))))))).)))).)))....(-....)..... ( -34.90) >DroSec_CAF1 17731 108 - 1 ACACCAUUGUUGUGGUUGAGCGGAUGACGAAAGGUGG---CCUGGUCGAGAGGGUAUCAGGCCUU-UUGGCCAAUGGAAUGAGCCAGAGGAUGCGGAUGGAG-GGGCCAGGGG .((((....((((.(((.....))).))))..)))).---(((((((....).(((((.((((..-..))))..(((......)))...)))))........-..)))))).. ( -35.70) >DroSim_CAF1 17670 108 - 1 ACACCAUUAUUGUGGUUGAGCGGAUGACGAAAGGUGG---CCUGGUCGAGAGGGUAUCAGGCCUU-UUGGCCAAUGGAAUGAGCCCGAGGAUGCGGAUGGAG-GGGCCAGGGG ...((....((((.(((.....))).))))....(((---(((((((((((((.(....).))))-))))))............(((......)))......-)))))))).. ( -34.30) >DroEre_CAF1 17929 111 - 1 ACACCAUUAUUGUGGUUGAGCGGAUGACGAAAGGUGGCCGCCUGGCCGAGAGGGUAUCAGGCCUU-UCGGCCAAUGGAAUGAGCCCGAGGAUGCGGUAUGAG-GCGCCUGGAG ...(((...(((.((((.(((((....(....)....)))).(((((((((((.(....).))))-)))))))......).)))))))((.(((........-)))))))).. ( -42.50) >DroYak_CAF1 17926 110 - 1 ACACCAUUAUUGUGGUUGAGCGGAUGACGAAAGGUGG---CCUGGCCGAGAGGGUAUCAGGCCUUUUUGGCCAAUGGAAUGGGCCCGAGGAUGCGGAAUGAGCGGGCCAGGGG .((((.((.((((.(((.....))).)))))))))).---(((((((((((((((.....)))))))))))).........((((((...((.....))...))))))))).. ( -43.70) >consensus ACACCAUUAUUGUGGUUGAGCGGAUGACGAAAGGUGG___CCUGGUCGAGAGGGUAUCAGGCCUU_UUGGCCAAUGGAAUGAGCCCGAGGAUGCGGAAUGAG_GGGCCAGGGG .((((....((((.(((.....))).))))..))))....(((((((....).(((((.((((.....))))...((......))....)))))...........)))))).. (-30.22 = -30.58 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:13 2006