Locus 7248

Sequence ID 3R_DroMel_CAF1
Location 19,101,638 – 19,101,731
Length 93
Max. P 0.514390
window11730

overview

Window 0

Location 19,101,638 – 19,101,731
Length 93
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -18.00
Consensus MFE -9.72
Energy contribution -10.38
Covariance contribution 0.67
Combinations/Pair 1.23
Mean z-score -1.94
Structure conservation index 0.54
SVM decision value -0.04
SVM RNA-class probability 0.514390
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19101638 93 - 27905053
---UGGCAUACA--CACACAAUGCUGUUGCGUUAUCAUUAAAAGC-GAACCAAAAUGCGGC-AAAAGAAAAUAGA------AGCAAACAGCAAUGAGCAACAGCAA
---.........--.......(((((((((....(((((....((-(........)))...-.............------.((.....)))))))))))))))). ( -19.30)
>DroEre_CAF1 17810 91 - 1
---UGGCAUACA----CACAAUGCUGUUGCGUUAUCAUUAAAAGC-GAACAAAAAUGCGGC-AAAAGAAAAUAGA------AGCAAACAGCAAUGAGCAACAGCAA
---.........----.....(((((((((....(((((....((-(........)))...-.............------.((.....)))))))))))))))). ( -19.30)
>DroWil_CAF1 18663 77 - 1
-----G----CA----UGCAAGUCUGUUGCGUUAUCAUUAAAAGCCAAACAAAAAUGCGGCGAAAAGAAAAUAGA------AGCAA-CAGC-------AGCGGC--
-----(----(.----(((..(.(((((((.............(((............)))..............------.))))-))))-------.)))))-- ( -15.59)
>DroYak_CAF1 17809 91 - 1
---UGGCAUACA----CACAAUGCUGUUGCGUUAUCAUUAAAAGC-GAACAAAAAUGCGGC-AAAAGAAAAUAGA------AGCAAACAGCAAUGAGCAACAGCAA
---.........----.....(((((((((....(((((....((-(........)))...-.............------.((.....)))))))))))))))). ( -19.30)
>DroAna_CAF1 17460 87 - 1
----GGCAUGUA----CACAAUGCUGUUGCGUUAUCAUUAAAAGC-GAACAAAAAUGCGGC-AAAAGAAAAUAGA------AGCAAACAGCAAC-AGCAGUAGC--
----........----.....((((((((((((..........((-(........))).((-.............------.)).))).)))))-)))).....-- ( -17.14)
>DroPer_CAF1 22877 103 - 1
UCGAGGCAUCUACAUAUACAAUGCUGUUGCGUUAUCAUUAAAAGC-GCACAAAAAUGCGGC-AAAAGAAAAUAGAGGAGAGAGCAGGCAGCAGGCAGCAG-AGGAA
..................(..((((((((((((.........)))-)).......(((.((-........................)).)))))))))).-.)... ( -17.36)
>consensus
___UGGCAUACA____CACAAUGCUGUUGCGUUAUCAUUAAAAGC_GAACAAAAAUGCGGC_AAAAGAAAAUAGA______AGCAAACAGCAAUGAGCAACAGCAA
.....................(((((((((.............((...........))........................((.....)).....))))))))). ( -9.72 = -10.38 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:12 2006