Locus 7247

Sequence ID 3R_DroMel_CAF1
Location 19,099,421 – 19,099,515
Length 94
Max. P 0.846852
window11729

overview

Window 9

Location 19,099,421 – 19,099,515
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 97.54
Mean single sequence MFE -15.12
Consensus MFE -14.95
Energy contribution -14.95
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.85
Structure conservation index 0.99
SVM decision value 0.77
SVM RNA-class probability 0.846852
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19099421 94 - 27905053
AGCACU--CGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCCAACGU
......--.(((((((((((...........))))).)).))))..........(((.....((((((..........))))))...)))...... ( -14.80)
>DroSec_CAF1 15351 94 - 1
AGCACU--CGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCCAACGU
......--.(((((((((((...........))))).)).))))..........(((.....((((((..........))))))...)))...... ( -14.80)
>DroSim_CAF1 15285 94 - 1
AGCACU--CGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCCAACGU
......--.(((((((((((...........))))).)).))))..........(((.....((((((..........))))))...)))...... ( -14.80)
>DroEre_CAF1 15540 94 - 1
AGCACU--CGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCCAACGU
......--.(((((((((((...........))))).)).))))..........(((.....((((((..........))))))...)))...... ( -14.80)
>DroYak_CAF1 15428 94 - 1
AGCACU--CGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCCAACGU
......--.(((((((((((...........))))).)).))))..........(((.....((((((..........))))))...)))...... ( -14.80)
>DroAna_CAF1 15506 95 - 1
AACACUCCCGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCAA-CCC
.........(((((((((((...........))))).)).)))).........((((.....((((((..........))))))...)))).-... ( -16.70)
>consensus
AGCACU__CGCCACGUAAUAUGCAAACACUCUAUUACCGCUGGCAAAUUCAAAUGCAUUCGGCCAUAACUCUUAUCCUUUAUGGACUUGCCAACGU
.........(((((((((((...........))))).)).))))..........(((.....((((((..........))))))...)))...... (-14.95 = -14.95 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:11 2006