| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,097,841 – 19,097,933 |
| Length | 92 |
| Max. P | 0.965726 |
| Location | 19,097,841 – 19,097,933 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 75.66 |
| Mean single sequence MFE | -21.83 |
| Consensus MFE | -13.33 |
| Energy contribution | -13.67 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.965726 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19097841 92 + 27905053 ACAACUUGUGGCAGGCGAUAAAAA-----AAAA----------UGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGCUAUUUUGUAAUGCCGAGGCCGC--GUCC .......(((((.(((........-----....----------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))--.... ( -26.20) >DroGri_CAF1 13391 81 + 1 -------CCACCCAGCUAUAAA---------AA----------CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGAUAUUUUGUAAUGUCGAGGCCAC--GAUU -------...............---------..----------.(((.((..((....)).((((((((..(((...-..)))..))))))))...)).)))..--.... ( -15.00) >DroEre_CAF1 13982 101 + 1 ACAACUUGUGGCAGGCGAUAAAAA------AAAAAGAAAAAACUGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGCUAUUUUGUAAUGCCGAGGCCGC--GUCC .......(((((.(((........------...............((((......))))..((((((((((((....-..)))).)))))))))))...)))))--.... ( -26.20) >DroWil_CAF1 15174 90 + 1 AAAAAAUA-------AGAAAAA-AAAAGACGAA----------CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUGGAAGCUAUUUUGUAAUGCCGAGGCCGC--GUCC ........-------.......-....((((..----------((((.((..((....)).((((((((((((.......)))).))))))))...)).)))))--))). ( -20.90) >DroMoj_CAF1 13506 83 + 1 -------CCAGCCAGCGAUAAA---------AA----------CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC-AAGAUAUUUUGUAAUGUCGAGGCCACGCGUUU -------...(((..(((((..---------..----------..((((......))))...(((((((..(((...-..)))..)))))))))))).)))......... ( -17.40) >DroAna_CAF1 13985 90 + 1 ACAACUUGUGGCAGGCGAUAAAA-------AAG----------CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUG-AAGCUAUUUUGUAAUGCCGAGGCCGC--CUCC .......(((((.(((.......-------...----------..((((......))))..((((((((((((....-..)))).)))))))))))...)))))--.... ( -25.30) >consensus ACAACUUGUGGCAGGCGAUAAA________AAA__________CGGCGUCAAUGAAUGCAAAUUACAAAUAGUCUUC_AAGCUAUUUUGUAAUGCCGAGGCCGC__GUCC ............................................(((.((..((....)).((((((((((((.......)))).))))))))...)).)))........ (-13.33 = -13.67 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:11 2006