Locus 7245

Sequence ID 3R_DroMel_CAF1
Location 19,096,858 – 19,096,972
Length 114
Max. P 0.977836
window11727

overview

Window 7

Location 19,096,858 – 19,096,972
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.69
Mean single sequence MFE -26.92
Consensus MFE -23.76
Energy contribution -23.35
Covariance contribution -0.41
Combinations/Pair 1.14
Mean z-score -2.08
Structure conservation index 0.88
SVM decision value 1.80
SVM RNA-class probability 0.977836
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19096858 114 + 27905053
GCGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCAC------CAAACAAUUUAGCGCAAAAUGGCGUACAACUC
((((........))))...(((((((......).))))))....((((((..((.((((....((((((....((......)------).))))))...))))))..))))))....... ( -26.80)
>DroPse_CAF1 14378 120 + 1
GCGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCGCCAACGCCAAACAAUUUAGCGCAAAAUGGCGUACAACUC
((((........))))...(((((((......).))))))....((((((..((.((((....((((((....(((....))).......))))))...))))))..))))))....... ( -29.60)
>DroYak_CAF1 12728 114 + 1
GCGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCAC------CAAACAAUUUAGCGCAAAAUGGCGUACAACUC
((((........))))...(((((((......).))))))....((((((..((.((((....((((((....((......)------).))))))...))))))..))))))....... ( -26.80)
>DroMoj_CAF1 12575 114 + 1
GCGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCAC------CAAACAAUUUAACGUAAAAUGGCGUACAACUC
((((........))))...(((((((......).))))))....((((((....(((((..(((....)))...)))))...------...((........))....))))))....... ( -23.80)
>DroAna_CAF1 13131 114 + 1
GUGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCAC------CAAACAAUUUAGCGCAAAAUGGCGUACAGCUC
((((........))))...(((((((......).))))))....((((((..((.((((....((((((....((......)------).))))))...))))))..))))))....... ( -24.90)
>DroPer_CAF1 14274 120 + 1
GCGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCGCCAACGCCAAACAAUUUAGCGCAAAAUGGCGUACAACUC
((((........))))...(((((((......).))))))....((((((..((.((((....((((((....(((....))).......))))))...))))))..))))))....... ( -29.60)
>consensus
GCGCAAUUAAAAGCGCAUCAAGUGUCAGUGGAGCACACUUAAAAAUGCCAAAUUAGUGCAAAUAUUGUUAUCAGGCACUCAC______CAAACAAUUUAGCGCAAAAUGGCGUACAACUC
((((........))))....((((((((((.....))))......((((......).))).............))))))....................((((......))))....... (-23.76 = -23.35 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:10 2006