Locus 7242

Sequence ID 3R_DroMel_CAF1
Location 19,090,940 – 19,091,033
Length 93
Max. P 0.933657
window11722

overview

Window 2

Location 19,090,940 – 19,091,033
Length 93
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 76.11
Mean single sequence MFE -18.77
Consensus MFE -12.37
Energy contribution -12.32
Covariance contribution -0.06
Combinations/Pair 1.11
Mean z-score -1.76
Structure conservation index 0.66
SVM decision value 1.23
SVM RNA-class probability 0.933657
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19090940 93 - 27905053
CACCAUU-UUUGUUAU---------------GUUUUGUGCUAUUACUGAGGAAUUUUAUGUAGUUUCUUUUUACAUAGCCAAGCCC-------CCGACUC-GAGUUAAUAUGAUAUU
.......-..((((((---------------((((((.(((((((..((((((((......))))))))..)).))))))))....-------..(((..-..)))))))))))).. ( -16.90)
>DroPse_CAF1 7094 106 - 1
CUC-UUU-UUUGUUAUUGUUUAUUUUUUUUUUUUUUGCGCUAUUAUUGAGGAAUUUUAUGUGGUUUCUUUUUACAUAGCCAAGGCC-------CAUACAUAUAUCCAAUAU-AUA-U
...-...-.....(((((..(((.........(((((.(((((((..((((((((......))))))))..)).))))))))))..-------.......)))..))))).-...-. ( -17.97)
>DroEre_CAF1 6952 94 - 1
CACAAUUUUUUGUUAU---------------GUUUUGCGCUAUUACUGAGGAAUUUUAUGUAGUUUCUUUUUACAUAGCCAAGCCC-------CCGACUC-GAGUUAAUAUGAUAUU
..........((((((---------------((((((.(((((((..((((((((......))))))))..)).))))))))....-------..(((..-..)))))))))))).. ( -16.90)
>DroYak_CAF1 6685 93 - 1
CACGAUU-UUUGUUAU---------------GUUUUGCGCUAGUACUGAGGAAUUUUAUGUAGUUUCUUUUUACAUAGCCAAGCCC-------CCGACUC-GAGUUAAUAUGAUAUU
.......-..((((((---------------((((((.(((((((..((((((((......))))))))..))).)))))))....-------..(((..-..)))))))))))).. ( -19.20)
>DroAna_CAF1 6436 99 - 1
UAUUAUUUUUUGUUAU---------------GUUUUGCGCUAUUACUGAGAAAUUUUAUAUGGUUUCUUUUUACAUAGCCAUGCCCAGCGGGGCUGCCGC-GAGUAAUUAUGAUU--
...........(((((---------------(.((((((((((((..((((((((......))))))))..)).)))))...((((....))))....))-)))....)))))).-- ( -24.10)
>DroPer_CAF1 6991 105 - 1
CUC-UUU-UUUGUUAUUGUUUAUUUUUU-UUUUUUUGCGCUAUUAUUGAGGAAUUUUAUGUGGUUUCUUUUUACAUAGCCAAGGCC-------CAUACAUAUAUCCAAUAU-AUA-U
...-...-.....(((((..(((.....-...(((((.(((((((..((((((((......))))))))..)).))))))))))..-------.......)))..))))).-...-. ( -17.53)
>consensus
CAC_AUU_UUUGUUAU_______________GUUUUGCGCUAUUACUGAGGAAUUUUAUGUAGUUUCUUUUUACAUAGCCAAGCCC_______CCGACUC_GAGUUAAUAUGAUA_U
.................................((((.(((((((..((((((((......))))))))..)).))))))))).................................. (-12.37 = -12.32 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:05 2006