Locus 7241

Sequence ID 3R_DroMel_CAF1
Location 19,087,335 – 19,087,453
Length 118
Max. P 0.684192
window11721

overview

Window 1

Location 19,087,335 – 19,087,453
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 90.03
Mean single sequence MFE -32.90
Consensus MFE -21.82
Energy contribution -23.50
Covariance contribution 1.68
Combinations/Pair 1.10
Mean z-score -2.98
Structure conservation index 0.66
SVM decision value 0.31
SVM RNA-class probability 0.684192
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19087335 118 - 27905053
AAGUCCAGACUUCUUUUUUAUGGGUAAACCGUACACCAUAUCGAGGGAUUACAGCAUAUACAGUAUACCCAACAUGGAAGAUUGUACAG-UUUUACUGUAGAAAAGAGUUGGAACAAAU
...(((((.((.(((((((((((..((((.(((((((((.....(((..(((..........)))..)))...)))).....))))).)-)))..))))))))))))))))))...... ( -30.90)
>DroSec_CAF1 3176 118 - 1
AAGUCCCGACUGCUUUUUUAUGUGAAAACCGUACACCAUAUCGAGGGAUUACAGCAUAUACAGUAUACCCAACAUGGAAGAUCGUACAG-UUUUACUGUAGAAAAGAGUUGGAACAAAC
..((.((((((.(((((((((...(((((.((((.((((.....(((..(((..........)))..)))...))))......)))).)-))))...))))))))))))))).)).... ( -30.10)
>DroSim_CAF1 3160 118 - 1
AAGUCCUGACUGCUUUUUUAUGUGAAAACCGUACACCAUAUCGAGGGAUUACAGCAUAUACAGUAUACCCAACAUGGAAGAUCGUACAG-UUUUACUGUAGAAAAGAGUUGGAACAAAC
..((.(..(((.(((((((((...(((((.((((.((((.....(((..(((..........)))..)))...))))......)))).)-))))...))))))))))))..).)).... ( -27.60)
>DroEre_CAF1 3307 119 - 1
AAGUCCUGACUUCUUCUCUAUGGGCAGACCGUACUCCAUAUGGAGGGAUUACCGCAUAUACAGUAUCCCCAACUUGGAAGAUCGUACAGCUUUUGCUGUAGACAAGAGUUGGAACAAAC
..((.(..(((((((((...((((...((.(((((((....))))((....)).....))).))...))))....))))))((.((((((....))))))))....)))..).)).... ( -35.20)
>DroYak_CAF1 3007 118 - 1
AAGUCCCCACUUCUUCUCUAUGGGAAAACCGUACUCCAUAUUGAAGGAUUACCGCAUAUACAGUAUCCUCAACUUGGAAGAUCGUACGG-UUUUACUGUAGAAAAGAAUUGGCACAAAC
..((..(((.(((((.(((((((.((((((((((((((..((((.((((.((.(......).))))))))))..)))).....))))))-)))).))))))).))))).))).)).... ( -40.70)
>consensus
AAGUCCCGACUUCUUUUUUAUGGGAAAACCGUACACCAUAUCGAGGGAUUACAGCAUAUACAGUAUACCCAACAUGGAAGAUCGUACAG_UUUUACUGUAGAAAAGAGUUGGAACAAAC
..((.((((((.(((((((((((.(((((.((((.((((.....(((..(((.(......).)))..)))...))))......)))).).)))).))))))))))))))))).)).... (-21.82 = -23.50 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:04 2006