Locus 7240

Sequence ID 3R_DroMel_CAF1
Location 19,081,917 – 19,082,037
Length 120
Max. P 0.648761
window11720

overview

Window 0

Location 19,081,917 – 19,082,037
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.78
Mean single sequence MFE -40.92
Consensus MFE -23.86
Energy contribution -23.78
Covariance contribution -0.08
Combinations/Pair 1.37
Mean z-score -1.80
Structure conservation index 0.58
SVM decision value 0.24
SVM RNA-class probability 0.648761
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19081917 120 - 27905053
CAAAGACGCAACCAUGCGGUGCUGGCGUGCCCACAACCUGCAUUGCGCCGCCAUAUACAGAAGUCACAACUACCCAAUUUGGUGCUUGGACGAAAGUCCAGUGGGCCAAUACGUGGUAAC
....((((((.((....)))))(((((.((.((..........)).))))))).........)))...(((((.....(((((.(((((((....)))))).).)))))...)))))... ( -41.00)
>DroVir_CAF1 5642 120 - 1
CAAAGACUGCACAUUGCGUUGCUGGCGGGCACAUAAUUUGCAAUGUGCAGCCAUUUAUCGCAGUCACAAUUAUCCCAUUUGGUGCUUGGACGAAAGUCCCGUGGGACAAUAUGUAUGUAC
....((((((.....((...))((((..((((((........)))))).))))......))))))((((((.((((((.........((((....)))).)))))).))).)))...... ( -40.80)
>DroGri_CAF1 5015 120 - 1
GAAGGAUUGCACUUUGCGCUGCUGGCGUGCGCACAAUUUGCAAUGUGCGGCCAUUUAUAGCAGUCACAAUUACCCCAUUUGGUGUGUGGAUGAGAGUCCAGUGGGCCAAUAUGUGGUCAC
....(((..((..(((((((((((..(((((((((........))))))..)))...)))))))(((...(((.((....)).)))(((((....)))))))).).)))..))..))).. ( -40.80)
>DroWil_CAF1 4021 120 - 1
CAAGGAUUCCACUUUGCGUUGUUGGCGUGCUCAUAAUCUUCAAUGUGCGGCCAUCUAUCGCAGUCACAACUAUCCCAUAUGGUGCAUGGAUGAGAGUCCUGUUGGUCAGUAUGUGGUAAC
...((((......(((((..(.((((.(((.(((........))).))))))).)...)))))........))))((((((.(((..((((....)))).....).)).))))))..... ( -34.04)
>DroMoj_CAF1 5268 120 - 1
CAAGGACUGCACAUUGCGUUGCUGGCGGGCGCAUAAUUUUCAAUGCGCAGCCAUUUACCGGAGUCACAACUAUCCCAUCUGGUGUGUGGAUGAGAGUCCUGUUGGACAGUAUGUAGUCAC
....(((((((.((((.....(..((((((((((........))))))..((((.(((((((...............))))))).)))).........))))..).)))).))))))).. ( -41.96)
>DroAna_CAF1 4876 120 - 1
CAAAGACGCUACCAUGCGGUGCUGGCGGGCGCAUAACCUUCAAUGCGCCGCCAUCUACAGAAGUCACAAUUACCCGAUCUGGUGCCUGGAUGAGAGUCCCACGGGCCAGUAUGUGGUAAC
....(((((.(((....)))))((((((.(((((........))))))))))).........)))....(((((((..(((((.(..((((....))))...).)))))..)).))))). ( -46.90)
>consensus
CAAAGACUCCACAUUGCGUUGCUGGCGGGCGCAUAAUCUGCAAUGCGCAGCCAUUUACAGCAGUCACAACUACCCCAUUUGGUGCGUGGAUGAGAGUCCAGUGGGCCAAUAUGUGGUAAC
....(((........((...))((((..((((((........)))))).)))).........)))...(((((.....(((((.(..((((....))))...).)))))...)))))... (-23.86 = -23.78 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:03 2006