Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,573,786 – 2,573,876 |
Length | 90 |
Max. P | 0.500000 |
Location | 2,573,786 – 2,573,876 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -25.25 |
Consensus MFE | -16.06 |
Energy contribution | -15.62 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.29 |
Mean z-score | -1.42 |
Structure conservation index | 0.64 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2573786 90 + 27905053 AAACGAAUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAAUCAACUGGUUGCGUAGCAACAAU----AUG-UUUUUGG----GCAUGGGAAU ..((.((((.((.(....).)).))))))....((((((.((((.((.((....(((((...)))))...----.))-.)).)))----)))))))... ( -24.10) >DroSec_CAF1 37919 90 + 1 AAACGAAUCGCGUGGCAACUUGGGGUUGUGCUAUUUAUGGCUUAUAACCAACUGGUUGCGUGGCAACAUU----AUG-UUUUUGG----GCAAUGGGAA ...((((..(((((((((((...((((((((((....))))..))))))....))))))(((....))))----)))-).)))).----.......... ( -24.60) >DroSim_CAF1 38116 90 + 1 AAACGAAUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAACCAACUGGUUGCGUAGCAACAUU----AUG-UUUUUGG----GCAUUGAAGA ..((.((((.((.(....).)).))))))....((((..(((((.((.((....(((((...)))))...----.))-.)).)))----))..)))).. ( -24.00) >DroEre_CAF1 40210 91 + 1 AAACGAUUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAACCAACUGGUUGCCUAGCAAUAUU----ACGCUUUUUAG----GCAUUAUAAG ..........((.(....).))((((..((.....))..))))..((((....))))(((((((......----..)))....))----))........ ( -23.00) >DroYak_CAF1 39764 90 + 1 AAACGAAUCGCCUGGCAACUCGGGGUUGCACUAUUUAUGGGCCAUAACCAACUGGUUGCCUAGCAAUAUU----AUG-UUUUUAG----GCAUUGGAAG ...(.(((.((((((((((.....)))))..((((..(((((...((((....)))))))))..))))..----...-....)))----))))).)... ( -24.80) >DroAna_CAF1 34448 97 + 1 AAACAAUUCGCGUGGCAACUUGGGGUUGGAUUGUUUAUUGGCUCCAACCAACUGGUUGCCUAGCGAUUCGGCAAGUG-UAUUUAAAGAAACAUU-UAAA .......((((..(((((((...(((((((..(((....))))))))))....)))))))..))))......(((((-(.((....)).)))))-)... ( -31.00) >consensus AAACGAAUCGCGUGGCAACUCGGGGUUGUACUAUUUAUGGCCCAUAACCAACUGGUUGCCUAGCAACAUU____AUG_UUUUUAG____GCAUUGGAAA .........((...((((((...((((((.(((....)))...))))))....))))))...))................................... (-16.06 = -15.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:14 2006