Locus 7239

Sequence ID 3R_DroMel_CAF1
Location 19,077,222 – 19,077,313
Length 91
Max. P 0.924314
window11718 window11719

overview

Window 8

Location 19,077,222 – 19,077,313
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 94.22
Mean single sequence MFE -26.80
Consensus MFE -22.76
Energy contribution -23.28
Covariance contribution 0.52
Combinations/Pair 1.13
Mean z-score -1.59
Structure conservation index 0.85
SVM decision value 0.93
SVM RNA-class probability 0.885076
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19077222 91 + 27905053
CCUACUGUGACGUAGAGCAACUCUGGCCGACAGCUG-UUUGGCCAGUGUUGACAAGCGCCACGCCGUCAAAAGCAAAUCUCAUUUAGUUUCC
......(((.(((....((((.(((((((((....)-.)))))))).))))....))).)))((........)).................. ( -26.40)
>DroSec_CAF1 91487 91 + 1
CCUACUGUGACGUAGAACAACUCUGGCCGACAGCUG-UUUGGCCAGUGUUGACAAACGCCACGCCGUCAAAAGCAAAUCUCAUUUAGUUUCC
......(((.(((....((((.(((((((((....)-.)))))))).))))....))).)))((........)).................. ( -25.00)
>DroSim_CAF1 94571 91 + 1
CCUACUGUGACGUAGGGCAACUCUGGCCGACAGCUG-UUCGGCCAGUGUUGACAAACGCCACGCAGUCAAAAGCAAAUCUCAUUUAGUUUCC
...((((((.(((..(.((((.(((((((((....)-.)))))))).)))).)..)))...))))))......................... ( -29.70)
>DroEre_CAF1 102800 92 + 1
CCUGCUGUGACGUAGGUCAACUCUGGCCGACAGCUGGUUCAGCCAGUGUUGACAAACGCCACGCCGUCAAAAGCAAAUCUCAUUUAGUUUCC
..((((.((((((..((((((.(((((.((........)).))))).))))))..))((...)).))))..))))................. ( -28.50)
>DroYak_CAF1 97420 92 + 1
CCUACUGGCACGUAGAGCAACUCUGGCCGACAGCUGGUUGAGCCAGUGUUGACAAACGCCACGCCGUCAAAAGCAAAUCUCAUUUAGUUUCC
......(((.(((....((((.(((((((((.....)))).))))).))))....)))....)))........................... ( -24.40)
>consensus
CCUACUGUGACGUAGAGCAACUCUGGCCGACAGCUG_UUCGGCCAGUGUUGACAAACGCCACGCCGUCAAAAGCAAAUCUCAUUUAGUUUCC
...((((((.(((....((((.((((((((........)))))))).))))....))).)))((........))...........))).... (-22.76 = -23.28 +   0.52)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 9

Location 19,077,222 – 19,077,313
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 94.22
Mean single sequence MFE -31.38
Consensus MFE -26.16
Energy contribution -26.52
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 1.16
SVM RNA-class probability 0.924314
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19077222 91 - 27905053
GGAAACUAAAUGAGAUUUGCUUUUGACGGCGUGGCGCUUGUCAACACUGGCCAAA-CAGCUGUCGGCCAGAGUUGCUCUACGUCACAGUAGG
.....(((..........(((......)))((((((...(.((((.((((((..(-(....)).)))))).)))))....))))))..))). ( -27.60)
>DroSec_CAF1 91487 91 - 1
GGAAACUAAAUGAGAUUUGCUUUUGACGGCGUGGCGUUUGUCAACACUGGCCAAA-CAGCUGUCGGCCAGAGUUGUUCUACGUCACAGUAGG
.....(((..........(((......)))(((((((....((((.((((((..(-(....)).)))))).))))....)))))))..))). ( -30.60)
>DroSim_CAF1 94571 91 - 1
GGAAACUAAAUGAGAUUUGCUUUUGACUGCGUGGCGUUUGUCAACACUGGCCGAA-CAGCUGUCGGCCAGAGUUGCCCUACGUCACAGUAGG
(....)....................(((((((((((..(.((((.((((((((.-(....))))))))).)))).)..))))))).)))). ( -36.70)
>DroEre_CAF1 102800 92 - 1
GGAAACUAAAUGAGAUUUGCUUUUGACGGCGUGGCGUUUGUCAACACUGGCUGAACCAGCUGUCGGCCAGAGUUGACCUACGUCACAGCAGG
(....)............(((......)))(((((((..((((((.((((((((........)))))))).))))))..)))))))...... ( -37.50)
>DroYak_CAF1 97420 92 - 1
GGAAACUAAAUGAGAUUUGCUUUUGACGGCGUGGCGUUUGUCAACACUGGCUCAACCAGCUGUCGGCCAGAGUUGCUCUACGUGCCAGUAGG
(....)..........(((((...((((((.(((.....((((....))))....)))))))))((((((((...))))..).)))))))). ( -24.50)
>consensus
GGAAACUAAAUGAGAUUUGCUUUUGACGGCGUGGCGUUUGUCAACACUGGCCAAA_CAGCUGUCGGCCAGAGUUGCUCUACGUCACAGUAGG
(....)............((........))(((((((....((((.((((((............)))))).))))....)))))))...... (-26.16 = -26.52 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:02 2006