| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,076,766 – 19,076,862 |
| Length | 96 |
| Max. P | 0.716216 |
| Location | 19,076,766 – 19,076,862 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 72.38 |
| Mean single sequence MFE | -21.81 |
| Consensus MFE | -12.93 |
| Energy contribution | -13.85 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19076766 96 + 27905053 U-AGUCCACCUCCUUGGAGAAGGAAUCAUUGCCAAGAUUGUAAGGAUUCUUGGGCAAAGCUGA-UAAAG---ACGACAAAAGCGAAGGUAUGUGGAAAAAC .-..(((((.(((((....)))))(((.(((((((((..........)))).))))).(((..-.....---........)))...)))..)))))..... ( -22.06) >DroSec_CAF1 91003 99 + 1 U-AGUCCACCUCCUUGGAGAAGGAAUCAUUGCCAAGAUUGUAAGAUUCCUUGGGCAAAGCUGA-CAAAGGAAACGGCAGAAGGAAAGGUAUGAGGAAAGUC .-.((((..(((....)))((((((((.((((.......))))))))))))))))....(((.-(...(....).))))...................... ( -25.20) >DroSim_CAF1 94086 99 + 1 U-AGUCCACCUCCUUGGAGAAGGAAUCAUUGCCAAGAUUGUAAGAUUCCUUGGGCAAAGCUGA-CAAAGGAAACGGCAGAAGGAAAGGUAUGAGGAAAGUC .-.((((..(((....)))((((((((.((((.......))))))))))))))))....(((.-(...(....).))))...................... ( -25.20) >DroEre_CAF1 102326 94 + 1 U-AGUCCACCUCCUUGGAGAAGGAAUCAUUGCUAAGAUCGUAAGAUUCCUUGGGCAAAGCUGG-CAAAAAAGACAAAAAAAGUAAAGGUA-----AAAUAC .-.((((..(((....)))((((((((.((((.......))))))))))))))))...(((.(-(................))...))).-----...... ( -21.59) >DroYak_CAF1 96964 87 + 1 U-AAUCCACCUCCUUGGAGAAAGAAUCAUUGCUAAGGUUGUAGGAUUCCUUGGGCAAAGCUGG-CAAAG-------GAAAGGUAUAAGUU-----AAAAGC .-..(((((..((((((...((......)).))))))..)).)))((((((.(.((....)).-).)))-------)))...........-----...... ( -19.40) >DroPer_CAF1 98544 93 + 1 CAAAUCUAUCUCAUUGGACAACGAGUCAUUUGACGGAUUGUAAACCUCCUUGGGAAUUUCUAGACAAGAG-------AGAAACAAUUGUU-GAAUCAAUCC ....((((......))))((((..(((....))).((((((....(((((((............)))).)-------))..)))))))))-)......... ( -17.40) >consensus U_AGUCCACCUCCUUGGAGAAGGAAUCAUUGCCAAGAUUGUAAGAUUCCUUGGGCAAAGCUGA_CAAAGG__ACG_CAAAAGCAAAGGUA_GAGGAAAAAC ...((((..(((....)))((((((((.((((.......)))))))))))))))).............................................. (-12.93 = -13.85 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:41:00 2006