Locus 7237

Sequence ID 3R_DroMel_CAF1
Location 19,074,683 – 19,074,782
Length 99
Max. P 0.732480
window11716

overview

Window 6

Location 19,074,683 – 19,074,782
Length 99
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 83.16
Mean single sequence MFE -27.22
Consensus MFE -18.88
Energy contribution -18.97
Covariance contribution 0.09
Combinations/Pair 1.23
Mean z-score -2.36
Structure conservation index 0.69
SVM decision value 0.43
SVM RNA-class probability 0.732480
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19074683 99 - 27905053
UUAUUCUUGUGCGGCUUUCCUUGGAAUUUCACUGCACAAAUUCUGACACACGCAGGAUAAUA--AUCUCUCUCAACUGAGAGCAACUGAGAGAGGAAAGCU
......((((((((..(((....))).....))))))))((((((.(....)))))))....--.(((((((((..((....))..)))))))))...... ( -28.60)
>DroSec_CAF1 88950 98 - 1
UUAUCGUUGUGCGGCUUUCCUUGGAAUUUCACUGCAAAAAUUCUGACACAC-CAGGAUAAUA--AUCUCUCUCAACUGAGAGCAACUGAGAGAGGAAAGCU
............((((((((((....(((((.(((....((((((......-))))))....--...((((......)))))))..))))))))))))))) ( -27.80)
>DroSim_CAF1 92034 98 - 1
UUAUCGUUGUGCGGCUUUCCUUGGAAUUUCACUGCAAAAAUUCUGACACAC-CAGGAUAAUA--AUCUCUCUCAACUGAGAGCAACUGAGAGAGGAAAGCU
............((((((((((....(((((.(((....((((((......-))))))....--...((((......)))))))..))))))))))))))) ( -27.80)
>DroEre_CAF1 98650 98 - 1
UUGUUCCUGUGCAGUUUUCCGUGGAAUUUCAGUGCACAAAUUCUGACACAC-CAGGAUAAUA--AUCUCUCUCAACUGAGAGCAACGGAGAGAGGAAAGCU
.......((((((.(.(((....)))....).)))))).((((((......-))))))....--.((((((((...((....))...))))))))...... ( -25.80)
>DroWil_CAF1 112249 91 - 1
UUAUCCUUGUGCAGUUUCCCGUGGAAUUUUGCUGCACGAAUUCUGACACAG-GAUGAAGAUGAAACUUUUC------GAGAGGAACUUUU---CAUAAGCU
(((((((.((((((.....((((.(.......).))))....))).)))))-)))))..((((((..((((------....))))..)))---)))..... ( -26.10)
>DroYak_CAF1 94861 98 - 1
UCAUCCUUGUGCAGUUUUCCUUGGAAUUUCAGUGCACAAAUUCUGACACAC-CAGGAUAAAA--AUCUCUCUCUACUGAGAGCAACUGUGAGAGGAAAGCU
...(((((.(((((((.((((.((....((((..........))))....)-))))).....--..(((((......))))).))))))).)))))..... ( -27.20)
>consensus
UUAUCCUUGUGCAGCUUUCCUUGGAAUUUCACUGCACAAAUUCUGACACAC_CAGGAUAAUA__AUCUCUCUCAACUGAGAGCAACUGAGAGAGGAAAGCU
............(((((((((((((((((........)))))))......................(((((......))))).........)))))))))) (-18.88 = -18.97 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:59 2006