Locus 7236

Sequence ID 3R_DroMel_CAF1
Location 19,072,211 – 19,072,314
Length 103
Max. P 0.828518
window11715

overview

Window 5

Location 19,072,211 – 19,072,314
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 81.36
Mean single sequence MFE -24.02
Consensus MFE -20.06
Energy contribution -20.70
Covariance contribution 0.64
Combinations/Pair 1.16
Mean z-score -1.74
Structure conservation index 0.84
SVM decision value 0.71
SVM RNA-class probability 0.828518
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19072211 103 - 27905053
AUAAACAAGUGAAAUCCAUUGCAAUUGAAAUUUUCAAAUAAAUUUGACUUUAAGUGCCAUCGCAUUUUUCUCAGUGUGCUCGUGCAUUGAACUGCUGUGGCGC
......((((.((((..(((................)))..)))).))))...(((((((.(((......((((((((....))))))))..))).))))))) ( -22.19)
>DroSec_CAF1 86610 103 - 1
AUAAUCAAGCGAAAUCCAUUGCAAUUGAUAUUUUCAAAUAAAUUUGACUUUAAGUGCCAUAGCAUUUUUCUAAGUGUACUCGUGCAUUGAACUGCUGCGGCGC
....((((((((......))))..((((.....))))......))))......(((((.(((((.(((....((((((....))))))))).))))).))))) ( -23.70)
>DroSim_CAF1 89666 103 - 1
AUAAUCAAGCGAAAUCCAUUGCAAUUGAUAUUUUCAAAUAAAUUUGACUUUAAGUGCCAUAGCAUUUUUCUCAGUGUAUUCGUGCAUUGAACUGCUGCGGCGC
....((((((((......))))..((((.....))))......))))......(((((.(((((......((((((((....))))))))..))))).))))) ( -25.70)
>DroEre_CAF1 96164 81 - 1
GCA-------------------AUUUAAAAUA--CAAAUAAAUUCGAAUUUAAGUGCCGC-GCAUUUUUCUCAGUGUGCUCGUGCAUUGAACCGCUGCGGCGC
...-------------------..........--...................(((((((-((.......((((((((....))))))))...)).))))))) ( -20.10)
>DroYak_CAF1 92282 103 - 1
AGAAACAGCUGAAAUCCCUUGCAUUUGAAGUAGUCAAAUAAAUUCGAAUUUAAGUGCCAUAGCAUUUUUCUCAGUGUGCUCGUGCAUUGAACUGCUGUGGCGC
.(((...((...........))((((((.....))))))...)))........(((((((((((......((((((((....))))))))..))))))))))) ( -28.40)
>consensus
AUAAACAAGCGAAAUCCAUUGCAAUUGAAAUUUUCAAAUAAAUUUGACUUUAAGUGCCAUAGCAUUUUUCUCAGUGUGCUCGUGCAUUGAACUGCUGCGGCGC
.....................................................(((((((((((......((((((((....))))))))..))))))))))) (-20.06 = -20.70 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:58 2006