| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,071,996 – 19,072,098 |
| Length | 102 |
| Max. P | 0.846900 |
| Location | 19,071,996 – 19,072,098 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.57 |
| Mean single sequence MFE | -28.38 |
| Consensus MFE | -21.53 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19071996 102 - 27905053 UGCCCCGCCCAACGCCCAACGCCCACCACUGGGCCACUGUUCACAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCCGGCUAUCGAAUGCUUUUUAGCCCACGA ......((.....((.((..(((((....)))))......(((....))))).))....((((((((((((....))))).)))))))......))...... ( -28.10) >DroPse_CAF1 93321 95 - 1 -GCCC------CCAACCCGCGCCCACAUGGGUGAUCCCCUUCAAAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCAGGCUAUCGAAUGCUUUUUAGUCCACGA -....------........(((((....))))).................((((.(((.((((((((((((....))))).))))))).....))).)))). ( -27.80) >DroSec_CAF1 86392 102 - 1 UGCCCCGCCUACCGUCCACCUCCCACCACUGGGCCACUGUUCACAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCCGGCUAUCGAAUGCUUUUUAGCCCACGA .............................((((((((...(((....))).))).....((((((((((((....))))).)))))))......)))))... ( -27.70) >DroEre_CAF1 95942 91 - 1 -----------CCAUGCACCGCCCACCUCUGGGCCACUGUUCACAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCCGGCUAUCGAAUGCUUUUUAGCCCACGA -----------..((((((.(((((....)))))......(((....))).))))))..((((((((((((....))))).))))))).............. ( -31.20) >DroYak_CAF1 92042 102 - 1 GGUACCAACCACCACCCACCACCCACCUCUGGGCCACUGUUCACAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCCGGCUAUCGAAUGUUUUUUAGCCCACGA (((....))).................((((((((((...(((....))).))).....((((((((((((....))))).)))))))......))))).)) ( -27.70) >DroPer_CAF1 93185 95 - 1 -GCCC------CCAACCCGCGCCCACAUGGGUGAUCCCCUUCACAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCAGGCUAUCGAAUGCUUUUUAGUCCACGA -....------.......((((((....))((((......)))).......))))....((((((((((((....))))).))))))).............. ( -27.80) >consensus _GCCC______CCAACCACCGCCCACCUCUGGGCCACUGUUCACAUUUGAUGUGCAUUUGCAUUCGUGGCCCUCCGGCUAUCGAAUGCUUUUUAGCCCACGA ..............................((((.......(((((...))))).....((((((((((((....))))).)))))))......)))).... (-21.53 = -22.00 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:57 2006