Locus 7233

Sequence ID 3R_DroMel_CAF1
Location 19,056,451 – 19,056,571
Length 120
Max. P 0.569160
window11711

overview

Window 1

Location 19,056,451 – 19,056,571
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.78
Mean single sequence MFE -53.25
Consensus MFE -40.12
Energy contribution -40.27
Covariance contribution 0.14
Combinations/Pair 1.19
Mean z-score -2.23
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.569160
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19056451 120 - 27905053
GCAGGUGCUCAAGGCCAUUGCCGGAACGCCGACAGGUGGAGCUAUGGCCUGUCGCUUCCUCCAAGCCAAGUGGUUUGAGUUGGAGAAGCGGCUGGGACCUGGAACAAUCAGCUUCGCCAA
(..((((.((..(((....))).)).))))..).(((((((((..(((((((((((((.((((((((....))).....))))))))))))).))).))..((....))))))))))).. ( -51.30)
>DroVir_CAF1 93525 120 - 1
ACAGGUGCUCAAGGCCAUUGCGGGCACGCCCACCGGCGGUGCAAUGGCCUGUCGCUUUCUGCAGGCCAAAUGGUUUGAGCUGGAGAAGCGUCUGGGCGCGGGCACCAUUAGCUUCGCCAA
......(((((((.(((((....(((((((....))).))))..((((((((........))))))))))))))))))))(((.(((((...(((((....)).)))...))))).))). ( -55.90)
>DroGri_CAF1 83058 120 - 1
GCAGGUGCUCAAGGCCAUUGCGGGCACGCCCACCGGCGGGGCGAUGGCCUGCCGCUUUCUGCAGGCCAAAUGGUUUGAGCUGGAGAAGCGCCUGGGACCGGGCACCAUUAGCUUUGCCAA
((((..((.....))..))))(((....)))...((((((((..((((((((........))))))))((((((....(((.....)))(((((....))))))))))).)))))))).. ( -58.50)
>DroEre_CAF1 73147 120 - 1
GCAGGUGCUCAAGGCCAUCGCAGGAACGCCGACGGGCGGUGCUAUGGCCUGUCGCUUCCUUCAGGCCAAGUGGUUCGAGCUGGAGAAGCGCCUGGGUCCUGGAACAAUCAGUUUCGCCAA
.(((((((((.(((((((.(((....((((....)))).))).)))))))......((((((..(((....)))..)))..)))).))))))))(((...(((((.....)))))))).. ( -50.60)
>DroWil_CAF1 89526 120 - 1
UCAGGUGCUUAAGGCCAUUGCAGGCACACCCACAGGAGGCGCCAUGGCCUGUCGUUUUCUUCAGGCCAAAUGGUUUGAGCUGGAGAAACGUCUGGGUGCUGGUACCAUAAGUUUCGCCAA
......(((((((.(((((...(((.(..((...))..).))).(((((((..(....)..)))))))))))))))))))(((.(((((.....((((....))))....))))).))). ( -46.50)
>DroMoj_CAF1 74225 120 - 1
GCAGGUGCUCAAGGCCAUUGCCGGCACGCCCACAGGCGGUGCAAUGGCCUGCCGCUUCCUGCAGGCCAAAUGGUACGAGCUAGAGAAGCGUCUGGGACCGGGCACCAUUAGCUUUGCCAA
(((((.((...((((((((((..((.((((....))))))))))))))))...))..)))))........(((((.(((((((....(.(((((....))))).)..)))))))))))). ( -56.70)
>consensus
GCAGGUGCUCAAGGCCAUUGCAGGCACGCCCACAGGCGGUGCAAUGGCCUGUCGCUUCCUGCAGGCCAAAUGGUUUGAGCUGGAGAAGCGUCUGGGACCGGGCACCAUUAGCUUCGCCAA
...((((((((((.(((((((.....((((....))))..))..(((((((..........)))))))))))))))))))....(((((...(((.........)))...)))))))).. (-40.12 = -40.27 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:54 2006