Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 19,049,712 – 19,049,804 |
Length | 92 |
Max. P | 0.520922 |
Location | 19,049,712 – 19,049,804 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 76.34 |
Mean single sequence MFE | -8.52 |
Consensus MFE | 0.00 |
Energy contribution | 0.00 |
Covariance contribution | 0.00 |
Combinations/Pair | nan |
Mean z-score | -1.15 |
Structure conservation index | -0.00 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.520922 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19049712 92 + 27905053 AAUUUAUUUGCUCUUUUUCAUAACAGCUAUCAUUUUGACCUUUAACGGUCUGCUUCUCUAUAUGAGCAUAUUAUCUAUCUAUUAUCUAUUCA ........(((((...........(((.........((((......)))).))).........)))))........................ ( -11.35) >DroSec_CAF1 62517 88 + 1 AAUCUAUUUGCUCUUUUUUAUAGCAGCUAUCAUUUUGAGCUUUAACGGUCUGGUUCUCUUUAUUAGCAUAUUAUC----UAUUAUCUACUCA ........((((.........))))((((.......(((((..........))))).......))))........----............. ( -10.14) >DroSim_CAF1 64285 87 + 1 AAUCUAUUUGCCCUUUUUU-UAGCAGCUAUCAUUUUGACCUUUAACGGUCUGGUUCUCUUUAUUAGCAUAUUAUC----UAUUAUCUACUCA ........(((........-..)))((((.......((((......)))).((....))....))))........----............. ( -7.80) >DroEre_CAF1 65412 87 + 1 UAUCUACUU-AUCUUUUUCACAGCAGUUACGAUUUUGACCUUUAACGCCCAGGUUCUCUACAUGAACGCAUUAUC----UAUUAUCUAUACA .........-............((.((((......)))).............((((.......))))))......----............. ( -6.30) >DroYak_CAF1 66150 76 + 1 UAUCUAAUUAAUCUUUUUCACGGCACUUACGAUUGUGACCUU------------UCUCUAUAUAAACAUAUUAUA----UAUUAUCUAUACA .....................(((((........))).))..------------....(((((((.....)))))----))........... ( -7.00) >consensus AAUCUAUUUGCUCUUUUUCAUAGCAGCUAUCAUUUUGACCUUUAACGGUCUGGUUCUCUAUAUGAGCAUAUUAUC____UAUUAUCUAUUCA ............................................................................................ ( 0.00 = 0.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:53 2006