Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,570,444 – 2,570,562 |
Length | 118 |
Max. P | 0.692025 |
Location | 2,570,444 – 2,570,562 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.72 |
Mean single sequence MFE | -36.88 |
Consensus MFE | -21.23 |
Energy contribution | -22.65 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.38 |
Mean z-score | -1.53 |
Structure conservation index | 0.58 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2570444 118 + 27905053 CUACGGAUCUGCCCAGCUUU-UUUCAUGCCUUCGAGACCCCAAUCCCC-CGGCCAGGUAUGUUUUGGCCAUGAACGGGAAAGGUCUUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA ...((((...((((......-.(((((......((........))...-.(((((((.....))))))))))))(((((((..(....)..)))))))))))..))))............ ( -37.40) >DroSec_CAF1 34478 119 + 1 CUACGGAUCAGCCCAGCAUUUUUGCAUGCCUUGGAGACCCCAAUCCCC-CGGCCAGGUAUCUUUUGGUCAUGAACGGGAAAGACCUUGGUUUUUCCCGGGGUUUUCCGCGUUAGUUAUGA ....((......)).(((....)))((((...(((((((((.......-.(((((((.....)))))))......(((((((((....)))))))))))))))))).))))......... ( -44.10) >DroSim_CAF1 34730 119 + 1 CUACGGAUCAGCCCAGCAUUUUUGCAUGCCUUGGAGACCCCAAUCCCC-CGACCAGGUAUCUUUUGGUCAUGAACGGGAAAGACCUUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA ....((......))..(((..(((.((((...(((((((((.......-.(((((((.....)))))))......(((((((((....)))))))))))))))))).)))))))..))). ( -46.90) >DroEre_CAF1 36754 118 + 1 CUACGGAUCACGCCAGCUUUUUUGCAAUCCUUCGAGACG-CGAUCCCC-CGACCAGGUAUGUUUUGGCCAUGAACGGGAACGGUGCUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA ....((......)).((......))..........((((-(((..(((-(((((((...((((((.(.......).))))))...)))))......)))))..)..))))))........ ( -32.70) >DroYak_CAF1 35681 106 + 1 CUGC----------AGCU--UUUGCAUGCCUUCGAGACC-CAAUAACG-CGGUUAGGUAUGGUUUGGCCAUGAACGGGAAAGAUUUUGGGUUUUCCAGGGGUUUUCCGCUUCAGUUAUGA (((.----------(((.--....(((((((....((((-(......)-.)))))))))))((((......)))).((((((.((((((.....)))))).))))))))).)))...... ( -29.20) >DroAna_CAF1 31230 96 + 1 -----------------------GCAGGCUUACGAAACCCCAAUCCUGAUAAUCAGGUAGAUAACUAGUAUGAACGG-AAUUCUGUUGGUUUUCCCCGGGGUUUUCCAAGCCAGUUAUGA -----------------------...(((((..((((((((...((((.....))))..((.(((((......((((-....))))))))).))...))))))))..)))))........ ( -31.00) >consensus CUACGGAUCAGCCCAGCUUUUUUGCAUGCCUUCGAGACCCCAAUCCCC_CGACCAGGUAUGUUUUGGCCAUGAACGGGAAAGAUCUUGGUUUUUCCCGGGGUUUUCCGCGUCAGUUAUGA .................................((((((((.........(((((((.....)))))))......(((((((((....)))))))))))))))))............... (-21.23 = -22.65 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:13 2006