Locus 7227

Sequence ID 3R_DroMel_CAF1
Location 19,041,203 – 19,041,299
Length 96
Max. P 0.597708
window11695

overview

Window 5

Location 19,041,203 – 19,041,299
Length 96
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.90
Mean single sequence MFE -28.12
Consensus MFE -12.68
Energy contribution -13.04
Covariance contribution 0.36
Combinations/Pair 1.11
Mean z-score -2.63
Structure conservation index 0.45
SVM decision value 0.13
SVM RNA-class probability 0.597708
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19041203 96 - 27905053
CAGCGAUUUUUU---------UGUUGUUGUUUUGGGUUGGGUGUUAUUUUUUGGGGUCUCGGUC--UCGCAUUUUGAU----------UGAGAUUCGGAGGAAUGAAAUAAAACUCG
(((((((.....---------.)))))))....(((((..((.(((((((((.(((((((((((--.........)))----------)))))))).))))))))).))..))))). ( -33.30)
>DroSec_CAF1 53823 94 - 1
CAGCGAUUUUUU---------UGUUGUUGUUUUG-GUUGGGUGUAAUU-UUUGGGGUCUCGGUC--UCGCAUUUUGAU----------UGAGAUUCGGAGGAAUGGAAUAAAACUCG
(((((((.....---------.)))))))....(-(((...(.((.((-(((.(((((((((((--.........)))----------)))))))).))))).)).)....)))).. ( -24.40)
>DroSim_CAF1 55518 94 - 1
CAGCGAUUUUUU---------UGUUGUUGUUUUG-GUUGGGUGUUAUU-UUUGGGGUCUCGGUC--UCGCAUUUUGAU----------UGAGAUUCGGAGGAAUGGAAUAAAACUCG
(((((((.....---------.))))))).....-...((((.(((((-(((.(((((((((((--.........)))----------)))))))).))......)))))).)))). ( -25.10)
>DroEre_CAF1 56750 102 - 1
CAGCGAUUU-UUUGCUGUCGUUGUUGUUGUAUUG-GUUGGGUGUUAUU-UUUGGGGUCUCGGUC--UCGCAUUUUGAU----------UGAGAUUGAGAGCAAAGAAAUAAAACUCG
(((((((..-......)))))))...........-...((((.(((((-(((..(.((((((((--(((.........----------))))))))))).)..)))))))).)))). ( -33.30)
>DroYak_CAF1 57117 103 - 1
CAGCGAUUUUUUUGCUGUUGUUGUUGUUGCUUUG-GUUGGGUGUUAUU-UUUGGGGUCUCGGUC--UCGCAUUUUGAU----------UGAGAUUCAGAGCAAUGAAAUAAAACUCG
((((((.....))))))(((((.(..((((((((-.(..((.......-))..)((((((((((--.........)))----------)))))))))))))))..))))))...... ( -29.20)
>DroAna_CAF1 53971 99 - 1
CAGCGGUU-------------UGUUAUUGCUUU---UUGGGUGUUAUU--UUGGGGUCUGGGUCUCUCGCCUCUCGGUCUCUCGCCUCUCCGAUUCGGAAGAAUGAAUUGAAACUCU
.((((((.-------------....))))))..---..((((.(((.(--((((((...((((.....(((....))).....)))))))).((((....))))))).))).)))). ( -23.40)
>consensus
CAGCGAUUUUUU_________UGUUGUUGUUUUG_GUUGGGUGUUAUU_UUUGGGGUCUCGGUC__UCGCAUUUUGAU__________UGAGAUUCGGAGGAAUGAAAUAAAACUCG
(((((((...............))))))).........((((.(((((.(((.((((((((...........................)))))))).))).)))))......)))). (-12.68 = -13.04 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:40 2006