Locus 7224

Sequence ID 3R_DroMel_CAF1
Location 19,031,565 – 19,031,664
Length 99
Max. P 0.804156
window11690

overview

Window 0

Location 19,031,565 – 19,031,664
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 92.93
Mean single sequence MFE -28.62
Consensus MFE -22.08
Energy contribution -21.80
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.94
Structure conservation index 0.77
SVM decision value 0.63
SVM RNA-class probability 0.804156
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19031565 99 - 27905053
AGGGUGUGC--UGGUGAAGAGUG-----GCCAGCGGAGACGGUGCGGACUGUAGAAAUUGUUCAAAUUCUACGUGGUCAGCAUUACGCUACAAAUUUACAAAAUGA
..(((((((--((((.(....).-----))))))(....)(((((.((((((((((.((....)).))))))..)))).))))))))))................. ( -30.80)
>DroSec_CAF1 44293 99 - 1
AGGGAGUGC--UGGUGAAGAGUG-----GCCAGAGGAGACGGUGCGGACCGUAGAAAUUGUUCAAAUUCUACGUGGUCAGCAUUACGCUACAAAUUUACAAAAUGA
.........--..(((((..(((-----((....(....)(((((.((((((((((.((....)).))))))..)))).)))))..)))))...)))))....... ( -28.40)
>DroSim_CAF1 45959 99 - 1
AGGGAGUGC--UGGUGAAGAGUG-----GCCAGAGGAGACGGUGCGGACCGUAGAAAUUGUUCAAAUUCUACGUGGUCAGCAUUACGCUACAAAUUUACAAAAUGA
.........--..(((((..(((-----((....(....)(((((.((((((((((.((....)).))))))..)))).)))))..)))))...)))))....... ( -28.40)
>DroEre_CAF1 46857 99 - 1
AGGGAGUGC--UGGUGAAGAGUG-----GCCAGAGGAGACGGUGCGGACCGUAGAAAUUGUUCAAAUUCUACGUGGUCAGCAUUACGCUACAAAUUUACAAUAUGA
.........--..(((((..(((-----((....(....)(((((.((((((((((.((....)).))))))..)))).)))))..)))))...)))))....... ( -28.40)
>DroYak_CAF1 47195 106 - 1
AGGGAGUGCUCUGGUGAAGAGUAAGGAUGGUGAAGGAGAUGGUGCGGACCGUGGAAAUUGUUCAAAUUCUACGUGGUCAGCAUUACGCUACAAAUUUACAAAAUGA
......((((((.....))))))......(((((.(((.((((((.((((((((((.((....)).))))))..)))).))))))..)).)...)))))....... ( -27.10)
>consensus
AGGGAGUGC__UGGUGAAGAGUG_____GCCAGAGGAGACGGUGCGGACCGUAGAAAUUGUUCAAAUUCUACGUGGUCAGCAUUACGCUACAAAUUUACAAAAUGA
.(..(((....(((((..................(....)(((((.((((((((((.((....)).))))))..)))).))))).)))))...)))..)....... (-22.08 = -21.80 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:35 2006