Locus 7222

Sequence ID 3R_DroMel_CAF1
Location 19,023,989 – 19,024,087
Length 98
Max. P 0.813792
window11686

overview

Window 6

Location 19,023,989 – 19,024,087
Length 98
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 71.78
Mean single sequence MFE -26.43
Consensus MFE -6.78
Energy contribution -6.53
Covariance contribution -0.25
Combinations/Pair 1.25
Mean z-score -2.40
Structure conservation index 0.26
SVM decision value 0.66
SVM RNA-class probability 0.813792
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19023989 98 + 27905053
--UUGC-----CUCGAAAUUCCCCAGAGAGUGAUCAAUUUUCUGCU--ACAAAAACAGUUGGAAGGUUCAUAUCUGUGGCGGGGGGGGGAGCAGGAAAG--UAGGUAAA
--((((-----(((....((((((...((....))...(..(((((--((.....(....)..((((....)))))))))))..))))))).......)--.)))))). ( -28.30)
>DroSec_CAF1 36882 88 + 1
--UUGA-----AUCGAAACUCCCCAGAGAGUGAUCAAUUUUCUGCU--AC------AGUUGGAAGGUUGAAAUCUGUGG----GGGGCACACAGGAAAG--UAGGUAAA
--....-----.......(((((((.(((....((((((((((((.--..------.).)))))))))))..))).)))----))))............--........ ( -25.90)
>DroSim_CAF1 38531 92 + 1
--UUGA-----AUCGAAACUCCCCAGAGAGUGAUCAAUUUUCUGCU--ACAAAAACAGUUGGAAGGUUCAAAUCUGUGG----GGGGCA--CAGCAAAG--UAGGUAAA
--....-----.......(((((((.(((.(((....(((((.(((--........))).)))))..)))..))).)))----))))..--........--........ ( -22.60)
>DroEre_CAF1 39257 90 + 1
--UUGC-----CUGCAAACUCCCCAGAGAGUGAUCAAUUUUCUGCU--ACAAAAACAGUUUGAAGGUUCAAAUCUGUGG----G----GGGCAGGAGAG--UAGGUAGC
--((((-----((((..((((......))))......((((((((.--.(....(((((((((....))))).))))..----)----..)))))))))--))))))). ( -31.90)
>DroYak_CAF1 39650 79 + 1
--UUGC-----CUCGCAACUCCCCAGAGAGUGAUCAAUUUUCUGCU--ACAAAAACAGU---AAGGUAAA--------G----U----AAACAGGAAAG--UAGGUAAA
--((((-----((.((...(((.((((((((.....)))))))).(--((.......))---).......--------.----.----.....)))..)--))))))). ( -15.40)
>DroAna_CAF1 37607 105 + 1
CCUUGAAACUUCUCCAUAUUCCCCGGAGUGUGAUCAAUAUUCUUCGGAAAAAAAAUAGUUGCAAGACCAUCAUAUGCCC----CGGGGACCAAGGAAAGGCAAGGUAAA
(((((...(((.(((....(((((((.(((((((.....(((....)))........(((....))).)))))))...)----))))))....)))))).))))).... ( -34.50)
>consensus
__UUGA_____CUCGAAACUCCCCAGAGAGUGAUCAAUUUUCUGCU__ACAAAAACAGUUGGAAGGUUCAAAUCUGUGG____GGGG_AAACAGGAAAG__UAGGUAAA
.......................((((((((.....))))))))................................................................. ( -6.78 =  -6.53 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:32 2006