| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 19,020,811 – 19,020,902 |
| Length | 91 |
| Max. P | 0.998603 |
| Location | 19,020,811 – 19,020,902 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 87.28 |
| Mean single sequence MFE | -24.37 |
| Consensus MFE | -23.67 |
| Energy contribution | -23.42 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.97 |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.998603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 19020811 91 + 27905053 CGCGGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGUCCCAUGCGGAAAAGUCAAGUGGCACAUUGCAAGCGA---GACAAGAAACCAAA-CA-A (((.((((.(((((((((((............)))).(((.....)))........))))))).))))..))).---..............-..-. ( -24.60) >DroSec_CAF1 33712 88 + 1 CGCAGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGUCCCAUGCGGAAAAGUCAAGUGGCACAUUGCAAGCGA---CACAAAAAACCAAA----- (((.((((.(((((((((((............)))).(((.....)))........))))))).))))..))).---..............----- ( -23.90) >DroSim_CAF1 35318 88 + 1 CGCGGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGUCCCAUGCGGAAAAGUCAAGUGGCACAUUGCAAGCGA---GACAAAAAACCAAA----- (((.((((.(((((((((((............)))).(((.....)))........))))))).))))..))).---..............----- ( -24.60) >DroEre_CAF1 36008 87 + 1 GGCGGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGUCCCAUGCGGAAAAGUCAAGUGGCGCAUUGCAGGCGAAC--ACAAGAAACC-------C .((.((((.(((((((((((............)))).(((.....)))........))))))).))))..))....--..........-------. ( -23.30) >DroYak_CAF1 36349 94 + 1 GGCGGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGUCCGAUGCGGAAAAGUCAAGUGGCACAUUGCAAGCCAAGAGACAAGAGACGAGA-UG-C (((.((((.(((((((((((............)))).((((...))))........))))))).))))..)))..................-..-. ( -27.50) >DroAna_CAF1 34625 93 + 1 CGUGGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGCCCCAUGCGGAAAAGUCAAGUGGCGCAUUGCAAGCGA---CAAAAAACACAACAAAGCC (((.((((.(((((((.(....).........(((.((.....)).))).......))))))).))))..))).---................... ( -22.30) >consensus CGCGGCAAAGUGCCACCGAAUUCAAUAAACACUUCGGUCCCAUGCGGAAAAGUCAAGUGGCACAUUGCAAGCGA___GACAAAAAACCAAA____C (((.((((.(((((((((((............)))).(((.....)))........))))))).))))..)))....................... (-23.67 = -23.42 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:31 2006