Locus 7219

Sequence ID 3R_DroMel_CAF1
Location 19,001,458 – 19,001,566
Length 108
Max. P 0.854859
window11683

overview

Window 3

Location 19,001,458 – 19,001,566
Length 108
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 85.57
Mean single sequence MFE -25.58
Consensus MFE -21.18
Energy contribution -22.43
Covariance contribution 1.25
Combinations/Pair 1.12
Mean z-score -2.31
Structure conservation index 0.83
SVM decision value 0.80
SVM RNA-class probability 0.854859
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 19001458 108 + 27905053
GCCGGCAUUUACCUUUAUGAAUAAAAUGGAGGCCGGGUGAGAAAUGCUUAACGUGCAUUUACUUACCAAUUUGGCGAUAUGCCACAGACACAGACCCAAAAAA--AA-AAA
...(((((....((((((.......))))))((((((((((((((((.......)))))).))))))....))))...)))))....................--..-... ( -28.90)
>DroSec_CAF1 14723 102 + 1
GCCGGCAUUUACCUUUAUGAAUAAAAUGGAGGCCGUGUGAGAAAUGCUUAACGUGCAUUUACUUACCAAUUUGGCGAUAUGCCACAGACACAGACCA--------AA-AAA
...(((((....((((((.......))))))((((.(((((((((((.......)))))).))))).....))))...)))))..............--------..-... ( -25.70)
>DroSim_CAF1 15715 109 + 1
GCCGGCAUUUACCUUUAUGAAUAAAAUGGAGGCCAGGUGAGAAAUGCUUAACGUGCAUUUACUUACCAAUUUGGCGAUAUGCCACAGACACAGACCCAAAAAAA-AA-AAA
...(((((....((((((.......))))))((((((((((((((((.......)))))).))))))....))))...))))).....................-..-... ( -29.60)
>DroEre_CAF1 16800 103 + 1
GCCGGCAUUUACCUUUAUGAAUAAAAUGGAGGCCGGCUGAGAAAUGCUUAACGUGCAUUUACUUACCAAUUUGGCGAUAUGCCACAAAGACAGAC---AAC----AA-AAA
((((((......((((((.......))))))))))))((((((((((.......)))))).))))......((((.....))))...........---...----..-... ( -26.20)
>DroYak_CAF1 15795 111 + 1
GCCGGCACUUACCUUUAUGAAUAAAAUGGAGGCCGGGUGAGAAAUGCUUAACGUGCAUUUACUUACCAAUUUGGCGAUAUGCCACAAACACAGACCCAAACCAAAAAUAAA
...((((.....((((((.......))))))((((((((((((((((.......)))))).))))))....))))....))))............................ ( -28.30)
>DroAna_CAF1 13003 102 + 1
GCCGGCACUUACCUUUAUGAAUAAUCUGGAGGUCG-CCGAGAAAAGUACAACGUGCAUUUACUUACCAAUUCCCCCAAAAGCCUUAAAAACACUU---AAA----AA-UAA
((((((....(((((((.((....))))))))).)-)))......((((...))))........................)).............---...----..-... ( -14.80)
>consensus
GCCGGCAUUUACCUUUAUGAAUAAAAUGGAGGCCGGGUGAGAAAUGCUUAACGUGCAUUUACUUACCAAUUUGGCGAUAUGCCACAAACACAGACCC_AAA____AA_AAA
...((((.....((((((.......))))))((((((((((((((((.......)))))).))))))....))))....))))............................ (-21.18 = -22.43 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:29 2006