Locus 7218

Sequence ID	3R_DroMel_CAF1
Location	18,996,944 – 18,997,052
Length	108
Max. P	0.585818

overview

Window 2

Location	18,996,944 – 18,997,052
Length	108
Sequences	6
Columns	116
Reading direction	forward
Mean pairwise identity	78.37
Mean single sequence MFE	-28.35
Consensus MFE	-14.80
Energy contribution	-14.63
Covariance contribution	-0.16
Combinations/Pair	1.27
Mean z-score	-1.86
Structure conservation index	0.52
SVM decision value	0.10
SVM RNA-class probability	0.585818
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18996944 108 + 27905053
UUUUGACUUGAUUGCCUGAAAUGACAAAAUUGAAUUAUUU-UGAUUUGAGCACC--GACAGUGGGUGGACAAUUAAAUAUUAUUUCCGCCUGUUGAU-UCU-GGCUCAGCGUG---
.....((((((..(((.(((.((...((((..((....))-..))))...))..--..(((..((((((.(((........)))))))))..))).)-)).-))))))).)).--- ( -27.20)
>DroVir_CAF1 24073 98 + 1
UU--CCGUUGAUUGGAUGA-AUGACAAAAUUAAAUUAUUU-UGAUUUAAG-GCC--GUUGGUGGGUGGACAAUUAAAUAUGAUUUCCGCCUGCUGC--------CCAGGCAUG---
.(--(((.....))))...-......((((((((....))-))))))...-(((--..(((..((((((.(((((....)))))))))))..))).--------...)))...--- ( -26.90)
>DroPse_CAF1 1415 111 + 1
UUUUGAGUUGAUUGCCUGAAAUGACAAAAUUGAAUUAUUUUUGAUUUAAAUGCCGCGACAGUGGGUGGACAAUUAAAUAUUAUUUCCGCCU-GCUGU-UCCACAGCCAGAGGC---
(((((.((((...................((((((((....)))))))).....(.(((((..((((((.(((........))))))))).-.))))-).).)))))))))..--- ( -30.40)
>DroWil_CAF1 22750 102 + 1
UGUACAGUUGAUUGGCUGA-AUGACAAAAUUGAAUUAUUU-UGAUUUAAGCGCC--GACGGUGGGUGGACAAUUAAAUAUUAUUUCCGCCUAGUGCU-UC-------AGCAUGU--
...((((((((((((((((-((..((((((......))))-)))))))...)))--))((.((((((((.(((........))))))))))).))..-))-------))).)))-- ( -26.90)
>DroMoj_CAF1 8174 98 + 1
UU--CCGUUGAUUGGAUGA-AUGACAAAAUUAAAUUAUUU-UGAUUUAAG-GCU--GUCGGUGGGUGGACAAUUAAAUAUGAUUUCCGCCUACUGC--------CUGAGCAUA---
.(--(((.....))))...-(((.(.((((((((....))-)))))).((-((.--...((((((((((.(((((....)))))))))))))))))--------))..)))).--- ( -28.10)
>DroAna_CAF1 9133 112 + 1
UUUUGAGUUGAUUGCCUGAAAUGACAAAAUUGAAUUAUUU-UGAUUUGAGCGCC--GUCAGUGGGUGGACAAUUAAAUAUUAUUUCCGCCUGUUGCUCUCC-AGCUCAGCGGGUUG
..((((((((...((((.((((..((((((......))))-)))))).)).)).--(.(((..((((((.(((........)))))))))..))))....)-)))))))....... ( -30.60)
>consensus
UUUUCAGUUGAUUGCCUGA_AUGACAAAAUUGAAUUAUUU_UGAUUUAAGCGCC__GACAGUGGGUGGACAAUUAAAUAUUAUUUCCGCCUGCUGCU_UC____CUCAGCAUG___
.............................((((((((....)))))))).........(((((((((((.(((........))))))))))))))..................... (-14.80 = -14.63 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:40:28 2006